>YOR089C VPS21 SGDID:S000005615, Chr XV from 490830-490198, reverse
           complement, Verified ORF, "GTPase required for transport
           during endocytosis and for correct sorting of vacuolar
           hydrolases; localized in endocytic intermediates;
           detected in mitochondria; geranylgeranylation required
           for membrane association; mammalian Rab5 homolog"
          Length = 210

 Score =  194 bits (492), Expect = 1e-54
 Identities = 100/178 (56%), Positives = 127/178 (71%), Gaps = 3/178 (1%)

Query: 22  STKVFNSKLVLLGDTSVGKSCIVVRFAKNEFYEYQESTIGAAFMTQLIDIGECTIKFEIW 81
           +T V + KLVLLG+ +VGKS IV+RF  N+F E +E TIGAAF+TQ + I E T+KFEIW
Sbjct: 2   NTSVTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIW 61

Query: 82  DTAGQERYRSLAPMYYRGASAAVIVYDITNKKSFEGAKGWIHELKSVHSNDIIIALAGNK 141
           DTAGQER+ SLAPMYYR A AA++VYD+T  +SF  A+ W+ EL    S DIIIAL GNK
Sbjct: 62  DTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNK 121

Query: 142 NDLEE---HRAVDRELAESFANSNNILFIETSAKTGQNVNELFLRIAKKLPLHKKEQE 196
            D+ +    R V RE  E  A    +LF ETSAKTG+NVN++FL I +K+PL   E++
Sbjct: 122 IDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLKTAEEQ 179

 Score = 14.2 bits (25), Expect = 1.9
 Identities = 5/12 (41%), Positives = 7/12 (58%)

Query: 7   NLNNNEKYETNQ 18
           N  +NE+   NQ
Sbjct: 180 NSASNERESNNQ 191

Lambda     K      H
   0.315    0.130    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 148
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 214
Length of database: 210
Length adjustment: 21
Effective length of query: 193
Effective length of database: 189
Effective search space:    36477
Effective search space used:    36477
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 19 (11.6 bits)
S2: 19 (11.9 bits)