Query= PFB0175c Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) hypothetical
protein
(442 letters)
>YAL025C MAK16 SGDID:S000000023, Chr I from 101146-100226, reverse
complement, Verified ORF, "Essential nuclear protein,
constituent of 66S pre-ribosomal particles; required for
normal concentration of free 60S ribosomal subunits;
required for maintenance of M1 satellite double-stranded
RNA of the L-A virus"
Length = 306
Score = 112 bits (280), Expect = 2e-29
Identities = 52/131 (39%), Positives = 87/131 (66%), Gaps = 4/131 (3%)
Query: 3 NDSVTWEILGKGKCSFKKKVDT-EIFCLNEYNVTGLCTKANCPLSNSVYSTIILDKGEIY 61
+D + W+++ + CS + K + FC NEYNVTGLCT+ +CPL+NS Y+T+ D G++Y
Sbjct: 2 SDEIVWQVINQSFCSHRIKAPNGQNFCRNEYNVTGLCTRQSCPLANSKYATVKCDNGKLY 61
Query: 62 LYMKSVERAHLPSALWSRVLLSLNKKEAFNVIYKE-LKFTQNIKHIKKCMKRYVRIKEIL 120
LYMK+ ERAH P+ LW R+ LS N +A I + L +++ +H KC +R+ ++ +++
Sbjct: 62 LYMKTPERAHTPAKLWERIKLSKNYTKALQQIDEHLLHWSKFFRH--KCKQRFTKLTQVM 119
Query: 121 KRSRKLILQKQ 131
R+L L+++
Sbjct: 120 ITERRLALREE 130
Score = 13.9 bits (24), Expect = 7.7
Identities = 4/6 (66%), Positives = 5/6 (83%)
Query: 404 DDDEIE 409
DD E+E
Sbjct: 213 DDGEVE 218
Lambda K H
0.316 0.132 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 203
Number of extensions: 12
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 442
Length of database: 306
Length adjustment: 30
Effective length of query: 412
Effective length of database: 276
Effective search space: 113712
Effective search space used: 113712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 24 (13.9 bits)
S2: 24 (13.9 bits)