>YDL084W SUB2 SGDID:S000002242, Chr IV from 305237-306577, Verified
           ORF, "Component of the TREX complex required for nuclear
           mRNA export; DEAD-box RNA helicase involved in early and
           late steps of spliceosome assembly; homolog of the human
           splicing factor hUAP56"
          Length = 446

 Score =  486 bits (1250), Expect = e-142
 Identities = 249/465 (53%), Positives = 324/465 (69%), Gaps = 32/465 (6%)

Query: 4   MDHNAQDELVDYEDDENILD----------SKDVXXXXXXXXXXXXXXXXAMRGSYATVH 53
           M H  +++L++Y D+E  +                                 +GSY  +H
Sbjct: 1   MSHEGEEDLLEYSDNEQEIQIDASKAAEAGETGAATSATEGDNNNNTAAGDKKGSYVGIH 60

Query: 54  TGGFKDFFLKPELLRAISESGFEHPSEVQQETIPAAITGTDILCQAKSGMGKTAVFVLSI 113
           + GFKDF LKPEL RAI + GFEHPSEVQQ TIP +I GTD+LCQAKSG+GKTAVFVLS 
Sbjct: 61  STGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLST 120

Query: 114 LQQLDTNENQDMQDTKEMXXXXXXXXXXKFVRCLGLAHTRELAYQIKNEFDRFSKYLKNV 173
           LQQLD    +                    V  + + + RELAYQI+NE+ RFSKY+ +V
Sbjct: 121 LQQLDPVPGE--------------------VAVVVICNARELAYQIRNEYLRFSKYMPDV 160

Query: 174 RCEVVYGGISMNKHIKLFK-EDNIPHIIIGTPGRILALIREKYLITDKIQHFVLDECDKC 232
           +  V YGG  ++K  +L K +D  PHI++ TPGR+ AL+REKY+    +++FV+DECDK 
Sbjct: 161 KTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKV 220

Query: 233 LEKLDMRSDVQKIFISTPLKKQVMFFSATMAKEMRDVCKKFLQNPVEIFIDDEAKLKLHG 292
           LE+LDMR DVQ+IF +TP  KQVM FSAT+++E+R +C++FLQNP+EIF+DDEAKL LHG
Sbjct: 221 LEELDMRRDVQEIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHG 280

Query: 293 LLQHYVKLQEKDKTRKLIEILDALEFNQVIIFVKSVTRAITLDKLLTECNFPSIAIHGGL 352
           L Q+Y+KL+E++K RKL ++LD LEFNQVIIFVKS TRA  L KLL   NFP+I +HG +
Sbjct: 281 LQQYYIKLEEREKNRKLAQLLDDLEFNQVIIFVKSTTRANELTKLLNASNFPAITVHGHM 340

Query: 353 EQQERIERYDKFKKFENRILVSTDLFGRGIDIERVNIVINYDMPENSDSYLHRVGRAGRF 412
           +Q+ERI RY  FK FE RI VSTD+FGRGIDIER+N+ INYD+   +D YLHRVGRAGRF
Sbjct: 341 KQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRF 400

Query: 413 GTKGLAVTFVSSQEDTLALNEVQTRFEVAISEMPNK-IDCNEYIN 456
           GTKGLA++FVSS+ED   L ++Q RF+V I+E P + ID + Y+N
Sbjct: 401 GTKGLAISFVSSKEDEEVLAKIQERFDVKIAEFPEEGIDPSTYLN 445

Lambda     K      H
   0.321    0.138    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 581
Number of extensions: 16
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 457
Length of database: 446
Length adjustment: 33
Effective length of query: 424
Effective length of database: 413
Effective search space:   175112
Effective search space used:   175112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 25 (14.4 bits)
S2: 25 (14.2 bits)