Query= PFB0670c Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) hypothetical
protein
(339 letters)
>YDL058W USO1 SGDID:S000002216, Chr IV from 345665-351037, Verified
ORF, "Essential protein involved in intracellular protein
transport, coiled-coil protein necessary for transport
from ER to Golgi; required for assembly of the
ER-to-Golgi SNARE complex"
Length = 1790
Score = 61.6 bits (148), Expect = 1e-13
Identities = 81/287 (28%), Positives = 145/287 (50%), Gaps = 40/287 (13%)
Query: 24 SHFTNEHNDKFN---DNLSQLQIPQELKKNIITNNLHD-EKVILT-DNNMKEKCNHID-- 76
S T E+++K N D L +LQ ELK I N + EKV L+ D ++EK N I
Sbjct: 1377 STITQEYSEKINTLEDELIRLQNENELKAKEIDNTRSELEKVSLSNDELLEEKQNTIKSL 1436
Query: 77 -------RDTITKE----ISIERLLHKIRNLENEKKFLLRFLENKKNIELEYKKALETQA 125
+D IT+ +SIER R+LE+ K+ L E+K +E KK LE ++
Sbjct: 1437 QDEILSYKDKITRNDEKLLSIER--DNKRDLESLKEQLRAAQESKAKVEEGLKK-LEEES 1493
Query: 126 AYVNSENKKSQFYENEWLNMKSLEYSLINSGKEPLRQSLEMLYDDSNINKLGGLTRNQEM 185
+ +E +KS+ MK LE S I S + L+ S+E + KL ++ E
Sbjct: 1494 SKEKAELEKSKEM------MKKLE-STIESNETELKSSMETIRKSDE--KLEQSKKSAE- 1543
Query: 186 FIIKLIEDHKNLNKERSIISKKYNEAVDANFQLYQQNEMLKAQNISLLEKNKDLVNEELD 245
ED KNL E+S + + NE+ + + + + ++A++ S LE K +N +
Sbjct: 1544 ------EDIKNLQHEKSDLISRINES-EKDIEELKSKLRIEAKSGSELETVKQELNNAQE 1596
Query: 246 K-KLNALNSSLIYVQKENIQLQDVLDQYSKLIKNIKDCPDVIKKMKQ 291
K ++NA ++++ + E+I+ +++ D+ +++ N ++ + ++K+
Sbjct: 1597 KIRINAEENTVLKSKLEDIE-RELKDKQAEIKSNQEEKELLTSRLKE 1642
Score = 53.5 bits (127), Expect = 4e-11
Identities = 71/314 (22%), Positives = 132/314 (42%), Gaps = 61/314 (19%)
Query: 13 FPFSSNEQKIISHFTNEHNDKFNDNLSQLQIPQELKKNI---------ITNNLHDEKVIL 63
F S Q + + N +K N++ + + LK++I I NL + K+
Sbjct: 870 FALSREMQAVEENCKNLQKEKDKSNVNHQKETKSLKEDIAAKITEIKAINENLEEMKIQC 929
Query: 64 TDNNMKEKCNHIDRDTI-------TKEISIERLLHKIRNLENEKKFLLRFLENKKNIELE 116
NN+ ++ HI ++ + + + + +L K+++L N K + EN+ I+
Sbjct: 930 --NNLSKEKEHISKELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQA--ENESLIKAV 985
Query: 117 YKKALETQAAYVNSENK---KSQFYENEWLNMKSLEYSL--------------------I 153
+ E+ N +NK SQ EN + S+E ++
Sbjct: 986 EESKNESSIQLSNLQNKIDSMSQEKENFQIERGSIEKNIEQLKKTISDLEQTKEEIISKS 1045
Query: 154 NSGKEPLRQSLEMLYD---------DSNINKLGGLTRNQEMFIIKLIEDHKNLNKERSII 204
+S K+ + +L + D N+NK+ LT+ +E +L +KNL E +
Sbjct: 1046 DSSKDEYESQISLLKEKLETATTANDENVNKISELTKTREELEAELAA-YKNLKNE---L 1101
Query: 205 SKKYNEAVDANFQLYQQNEMLKAQNISLLEKNKDLVNEELDKKLNALNSSLIYVQKENIQ 264
K + A ++ + E LK + I L EK E ++LN+L ++L ++KE+
Sbjct: 1102 ETKLETSEKALKEVKENEEHLKEEKIQL-EKEAT----ETKQQLNSLRANLESLEKEHED 1156
Query: 265 LQDVLDQYSKLIKN 278
L L +Y + I N
Sbjct: 1157 LAAQLKKYEEQIAN 1170
Score = 42.0 bits (97), Expect = 1e-07
Identities = 56/271 (20%), Positives = 116/271 (42%), Gaps = 17/271 (6%)
Query: 28 NEHNDKFNDNLSQLQIPQELKKNIITNNLHDEKVILTDNNMKEKCNHIDRDTITKEISIE 87
NE + ND ++ Q E K N+ + +V + +E+ N + + I+
Sbjct: 1176 NEEISQLNDEITSTQQENESIKK--KNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQIK 1233
Query: 88 RLLHKIRNLENEKKFLLRFLENKKNIELEYKKALETQAAYVNSENKKSQFYEN-EWLNMK 146
L K +N NE L E+ K++E E K E Q E + S+ + + K
Sbjct: 1234 EL--KKKNETNEASLL----ESIKSVESETVKIKELQDECNFKEKEVSELEDKLKASEDK 1287
Query: 147 SLEYSLINSGKEPLRQSLEMLYDDSNIN--KLGGLTRNQEMFIIKLIEDHKNLNKERSII 204
+ +Y + E +++ L+ + I K+ L++ +E +L K ++ER
Sbjct: 1288 NSKYLELQKESEKIKEELDAKTTELKIQLEKITNLSKAKEKSESELSRLKKTSSEERKNA 1347
Query: 205 SKKYNEAVDANFQLYQQNEMLKAQNISLLEKNKDLVNEELDKKLNALNSSLIYVQKENIQ 264
++ + + ++ +N+ + + LL + + +E +K+N L LI +Q EN
Sbjct: 1348 EEQLEKLKN---EIQIKNQAFEKER-KLLNEGSSTITQEYSEKINTLEDELIRLQNENEL 1403
Query: 265 LQDVLDQYSKLIKNIKDCPDVIKKMKQKRNT 295
+D ++ + D + +++K+NT
Sbjct: 1404 KAKEIDNTRSELEKVSLSNDEL--LEEKQNT 1432
Score = 31.6 bits (70), Expect = 2e-04
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 194 HKNLNKERSIISKKYNEAVDANFQLYQQNEMLKAQNISLLEKNKDLVNEELDKKLNALNS 253
H+NL ++ ++ ++ E +D +Q+ + +N S+LE V + LD ++ L
Sbjct: 757 HENLTEKLIALTNEHKE-LDEKYQILNSSHSSLKENFSILETELKNVRDSLD-EMTQLRD 814
Query: 254 SLIYVQKENIQLQDVLDQYSKLIKNIKDCPDVIKK 288
L KEN Q L +Y I +D ++K
Sbjct: 815 VLETKDKEN---QTALLEYKSTIHKQEDSIKTLEK 846
Score = 30.8 bits (68), Expect = 3e-04
Identities = 59/253 (23%), Positives = 95/253 (37%), Gaps = 53/253 (20%)
Query: 46 ELKKNIITNNLHDEKVILTDNNMKE---KCNHIDRDTITK----EISIERLLHKIR---- 94
ELK ++ T DEK+ + + +E H D I++ E IE L K+R
Sbjct: 1520 ELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSKLRIEAK 1579
Query: 95 ---NLENEKKFLLRFLENKKNIELEYKKALETQAAYVNSENKKSQFYENEWLNMKSLEYS 151
LE K+ L E K I E L+++ + E K Q + E
Sbjct: 1580 SGSELETVKQELNNAQE-KIRINAEENTVLKSKLEDIERELKDKQAE----IKSNQEEKE 1634
Query: 152 LINSGKEPLRQSLEMLYDDSNINKLGGLTRNQEMFIIKLIEDHKNLNKERSIISKKYNEA 211
L+ S + L Q L DS K + + K + L+++ ++ KYN+
Sbjct: 1635 LLTSRLKELEQEL-----DSTQQKAQKSEEERRAEVRKFQVEKSQLDEKAMLLETKYNDL 1689
Query: 212 VDANF---------------------QLYQQNEMLKAQNISLLEKNKD--------LVNE 242
V+ +L ++ + LKA+N L E N+D L+
Sbjct: 1690 VNKEQAWKRDEDTVKKTTDSQRQEIEKLAKELDNLKAENSKLKEANEDRSEIDDLMLLVT 1749
Query: 243 ELDKKLNALNSSL 255
+LD+K S L
Sbjct: 1750 DLDEKNAKYRSKL 1762
Score = 25.8 bits (55), Expect = 0.009
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 231 SLLEKNKDLVNE--ELDKKLNALNSSLIYVQKENIQLQDVLDQYSKLIKNIKDCPDVIKK 288
+L EK L NE ELD+K LNSS + KEN + + +KN++D D + +
Sbjct: 759 NLTEKLIALTNEHKELDEKYQILNSSHSSL-KENFSILET------ELKNVRDSLDEMTQ 811
Query: 289 MKQKRNT 295
++ T
Sbjct: 812 LRDVLET 818
Score = 23.9 bits (50), Expect = 0.034
Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 10/150 (6%)
Query: 29 EHNDKFNDNLSQLQIPQELKKNIITNNLHDEKVILTDNNMKEKCNHIDRDTITKEISIER 88
E N L ++ + K+ I +N +EK +LT + +KE +D + S E
Sbjct: 1603 EENTVLKSKLEDIERELKDKQAEIKSN-QEEKELLT-SRLKELEQELDSTQQKAQKSEEE 1660
Query: 89 LLHKIRNLENEKKFLLRFLENKKNIELEYKKALETQAAYVNSEN--KKSQFYENEWLNMK 146
++R + EK + E +E +Y + + A+ E+ KK+ + + +
Sbjct: 1661 RRAEVRKFQVEKS---QLDEKAMLLETKYNDLVNKEQAWKRDEDTVKKTTDSQRQEIEKL 1717
Query: 147 SLEYSLINSGKEPLRQSLEMLYDDSNINKL 176
+ E + + L+++ E D S I+ L
Sbjct: 1718 AKELDNLKAENSKLKEANE---DRSEIDDL 1744
Score = 23.1 bits (48), Expect = 0.058
Identities = 47/238 (19%), Positives = 94/238 (39%), Gaps = 17/238 (7%)
Query: 51 IITNNLHDEKVILTDNNMKEKCNHIDRDTITK-EISIERLLHKIRNLENEKKFLLRFLEN 109
+ N++ + L+ + +E N I + + K + +L +I +L+ E + L
Sbjct: 703 LFNENIYRIRTALSHDPDEEPINKISFEEVEKLQRQCTKLKGEITSLQTETESTHENLTE 762
Query: 110 KKNIELEYKKALETQAAYVNSENKKSQFYENEWLNMKSLEYSLINSGKEPLRQSLEMLYD 169
K K L+ + +NS + S EN ++ E + + + Q ++L
Sbjct: 763 KLIALTNEHKELDEKYQILNSSH--SSLKEN--FSILETELKNVRDSLDEMTQLRDVLET 818
Query: 170 DSNINKLGGLTRNQEMFIIKLIEDHKNLNKERSIISKKYNEAVDA----NFQLYQQNEML 225
N+ L + I K + K L K I + +A D L+ + +
Sbjct: 819 KDKENQTALL--EYKSTIHKQEDSIKTLEKGLETILSQKKKAEDGINKMGKDLFALSREM 876
Query: 226 KA--QNISLLEKNKDLVNEELDKKLNALN----SSLIYVQKENIQLQDVLDQYSKLIK 277
+A +N L+K KD N K+ +L + + ++ N L+++ Q + L K
Sbjct: 877 QAVEENCKNLQKEKDKSNVNHQKETKSLKEDIAAKITEIKAINENLEEMKIQCNNLSK 934
Score = 21.6 bits (44), Expect = 0.17
Identities = 43/195 (22%), Positives = 75/195 (38%), Gaps = 25/195 (12%)
Query: 45 QELKKNIITNNLHDEKVILTDNNMKEKCNHIDRDTITKEISIERLLHKIRNLENEKKFLL 104
++++ N N + K+ + +K+K I + KE+ RL + L++ +
Sbjct: 1596 EKIRINAEENTVLKSKLEDIERELKDKQAEIKSNQEEKELLTSRLKELEQELDSTQ---- 1651
Query: 105 RFLENKKNIELEYKKALETQAAYVNSENKKSQFYENEWLNMKSLEYSLINSGKEPLRQSL 164
+ K E +A + +KSQ E L +++ L+N + R
Sbjct: 1652 ---------QKAQKSEEERRAEVRKFQVEKSQLDEKAML-LETKYNDLVNKEQAWKR--- 1698
Query: 165 EMLYDDSNINKLGGLTRNQEMFIIKLIEDHKNLNKERSIISKKYNEAVDANFQLYQQNEM 224
D+ + K T +Q I KL ++ NL E S + K+ NE L
Sbjct: 1699 ----DEDTVKK---TTDSQRQEIEKLAKELDNLKAENSKL-KEANEDRSEIDDLMLLVTD 1750
Query: 225 LKAQNISLLEKNKDL 239
L +N K KDL
Sbjct: 1751 LDEKNAKYRSKLKDL 1765
Score = 20.0 bits (40), Expect = 0.49
Identities = 51/265 (19%), Positives = 112/265 (42%), Gaps = 33/265 (12%)
Query: 50 NIITNNLHDEKVILTDNNMKEKCNHIDRDTITKE-----ISIERLLHKIRN--LENEKKF 102
+II + K+ D + C+ ++ T+ + + ++ + R + + K
Sbjct: 2 DIIQGLIQQPKIQSVDETIPTLCDRVENSTLISDRRSAVLGLKAFSRQYRESVIASGLKP 61
Query: 103 LLRFLENKKNIELEYKKALET-QAAYVNSENKKSQFYENEWLNMKSLEYSLINSGKEP-- 159
LL L+ E K LET ++ + W++ +S + +GK P
Sbjct: 62 LLNTLKRDYMDEDSVKAILETILILFIRGDGHDD--LTRGWISQQSR----LQNGKYPSP 115
Query: 160 --LRQSLEMLYDDSNINKLGGLTRNQEMFIIKLIEDHKNLNKERSIISKKYNEAVDANFQ 217
++Q E + D ++ LT+++++ + L+E + N + + + EAV A
Sbjct: 116 LVMKQEKEQV-DQFSLWIADALTQSEDLIHL-LVEFWEIDNFHIRLYTIQLLEAVMATRP 173
Query: 218 LYQQNEMLKAQN-----ISLLEKNKDLVNEELDKKLNALNSSLIYVQK----ENI--QLQ 266
L ++ ++ +SLL+ + + +E L A+ + +VQK ENI +L
Sbjct: 174 LKARSALISLPTSISTMVSLLDDMHEPIRDEAILLLMAVVNDSPHVQKLVAFENIFERLF 233
Query: 267 DVLDQYSKLIKN--IKDCPDVIKKM 289
++++ L + + DC +I +
Sbjct: 234 SIIEEEGGLRGSLVVNDCLSLINNI 258
Score = 19.6 bits (39), Expect = 0.64
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 50 NIITNNLHDEKVILTDNNMKEKCNHIDRDTITKE 83
N TNN+ D +N +K + D+DT K+
Sbjct: 449 NNSTNNVGDNAKENGGSNKSDKESDSDKDTDGKD 482
Lambda K H
0.313 0.130 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1908
Number of extensions: 158
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 11
Length of query: 339
Length of database: 1790
Length adjustment: 40
Effective length of query: 299
Effective length of database: 1750
Effective search space: 523250
Effective search space used: 523250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 29 (16.0 bits)
S2: 29 (15.8 bits)