Query= PFB0670c Pf Annotation|Plasmodium_falciparum_TIGR|(protein coding) hypothetical protein (339 letters)
>YDL058W USO1 SGDID:S000002216, Chr IV from 345665-351037, Verified
            ORF, "Essential protein involved in intracellular protein
            transport, coiled-coil protein necessary for transport
            from ER to Golgi; required for assembly of the
            ER-to-Golgi SNARE complex"
          Length = 1790

 Score = 61.6 bits (148), Expect = 1e-13
 Identities = 81/287 (28%), Positives = 145/287 (50%), Gaps = 40/287 (13%)

Query: 24   SHFTNEHNDKFN---DNLSQLQIPQELKKNIITNNLHD-EKVILT-DNNMKEKCNHID-- 76
            S  T E+++K N   D L +LQ   ELK   I N   + EKV L+ D  ++EK N I   
Sbjct: 1377 STITQEYSEKINTLEDELIRLQNENELKAKEIDNTRSELEKVSLSNDELLEEKQNTIKSL 1436

Query: 77   -------RDTITKE----ISIERLLHKIRNLENEKKFLLRFLENKKNIELEYKKALETQA 125
                   +D IT+     +SIER     R+LE+ K+ L    E+K  +E   KK LE ++
Sbjct: 1437 QDEILSYKDKITRNDEKLLSIER--DNKRDLESLKEQLRAAQESKAKVEEGLKK-LEEES 1493

Query: 126  AYVNSENKKSQFYENEWLNMKSLEYSLINSGKEPLRQSLEMLYDDSNINKLGGLTRNQEM 185
            +   +E +KS+        MK LE S I S +  L+ S+E +       KL    ++ E 
Sbjct: 1494 SKEKAELEKSKEM------MKKLE-STIESNETELKSSMETIRKSDE--KLEQSKKSAE- 1543

Query: 186  FIIKLIEDHKNLNKERSIISKKYNEAVDANFQLYQQNEMLKAQNISLLEKNKDLVNEELD 245
                  ED KNL  E+S +  + NE+ + + +  +    ++A++ S LE  K  +N   +
Sbjct: 1544 ------EDIKNLQHEKSDLISRINES-EKDIEELKSKLRIEAKSGSELETVKQELNNAQE 1596

Query: 246  K-KLNALNSSLIYVQKENIQLQDVLDQYSKLIKNIKDCPDVIKKMKQ 291
            K ++NA  ++++  + E+I+ +++ D+ +++  N ++   +  ++K+
Sbjct: 1597 KIRINAEENTVLKSKLEDIE-RELKDKQAEIKSNQEEKELLTSRLKE 1642

 Score = 53.5 bits (127), Expect = 4e-11
 Identities = 71/314 (22%), Positives = 132/314 (42%), Gaps = 61/314 (19%)

Query: 13   FPFSSNEQKIISHFTNEHNDKFNDNLSQLQIPQELKKNI---------ITNNLHDEKVIL 63
            F  S   Q +  +  N   +K   N++  +  + LK++I         I  NL + K+  
Sbjct: 870  FALSREMQAVEENCKNLQKEKDKSNVNHQKETKSLKEDIAAKITEIKAINENLEEMKIQC 929

Query: 64   TDNNMKEKCNHIDRDTI-------TKEISIERLLHKIRNLENEKKFLLRFLENKKNIELE 116
              NN+ ++  HI ++ +       + +  + +L  K+++L N  K +    EN+  I+  
Sbjct: 930  --NNLSKEKEHISKELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQA--ENESLIKAV 985

Query: 117  YKKALETQAAYVNSENK---KSQFYENEWLNMKSLEYSL--------------------I 153
             +   E+     N +NK    SQ  EN  +   S+E ++                     
Sbjct: 986  EESKNESSIQLSNLQNKIDSMSQEKENFQIERGSIEKNIEQLKKTISDLEQTKEEIISKS 1045

Query: 154  NSGKEPLRQSLEMLYD---------DSNINKLGGLTRNQEMFIIKLIEDHKNLNKERSII 204
            +S K+     + +L +         D N+NK+  LT+ +E    +L   +KNL  E   +
Sbjct: 1046 DSSKDEYESQISLLKEKLETATTANDENVNKISELTKTREELEAELAA-YKNLKNE---L 1101

Query: 205  SKKYNEAVDANFQLYQQNEMLKAQNISLLEKNKDLVNEELDKKLNALNSSLIYVQKENIQ 264
              K   +  A  ++ +  E LK + I L EK       E  ++LN+L ++L  ++KE+  
Sbjct: 1102 ETKLETSEKALKEVKENEEHLKEEKIQL-EKEAT----ETKQQLNSLRANLESLEKEHED 1156

Query: 265  LQDVLDQYSKLIKN 278
            L   L +Y + I N
Sbjct: 1157 LAAQLKKYEEQIAN 1170

 Score = 42.0 bits (97), Expect = 1e-07
 Identities = 56/271 (20%), Positives = 116/271 (42%), Gaps = 17/271 (6%)

Query: 28   NEHNDKFNDNLSQLQIPQELKKNIITNNLHDEKVILTDNNMKEKCNHIDRDTITKEISIE 87
            NE   + ND ++  Q   E  K    N+  + +V    +  +E+ N    +     + I+
Sbjct: 1176 NEEISQLNDEITSTQQENESIKK--KNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQIK 1233

Query: 88   RLLHKIRNLENEKKFLLRFLENKKNIELEYKKALETQAAYVNSENKKSQFYEN-EWLNMK 146
             L  K +N  NE   L    E+ K++E E  K  E Q      E + S+  +  +    K
Sbjct: 1234 EL--KKKNETNEASLL----ESIKSVESETVKIKELQDECNFKEKEVSELEDKLKASEDK 1287

Query: 147  SLEYSLINSGKEPLRQSLEMLYDDSNIN--KLGGLTRNQEMFIIKLIEDHKNLNKERSII 204
            + +Y  +    E +++ L+    +  I   K+  L++ +E    +L    K  ++ER   
Sbjct: 1288 NSKYLELQKESEKIKEELDAKTTELKIQLEKITNLSKAKEKSESELSRLKKTSSEERKNA 1347

Query: 205  SKKYNEAVDANFQLYQQNEMLKAQNISLLEKNKDLVNEELDKKLNALNSSLIYVQKENIQ 264
             ++  +  +   ++  +N+  + +   LL +    + +E  +K+N L   LI +Q EN  
Sbjct: 1348 EEQLEKLKN---EIQIKNQAFEKER-KLLNEGSSTITQEYSEKINTLEDELIRLQNENEL 1403

Query: 265  LQDVLDQYSKLIKNIKDCPDVIKKMKQKRNT 295
                +D     ++ +    D +  +++K+NT
Sbjct: 1404 KAKEIDNTRSELEKVSLSNDEL--LEEKQNT 1432

 Score = 31.6 bits (70), Expect = 2e-04
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 194 HKNLNKERSIISKKYNEAVDANFQLYQQNEMLKAQNISLLEKNKDLVNEELDKKLNALNS 253
           H+NL ++   ++ ++ E +D  +Q+   +     +N S+LE     V + LD ++  L  
Sbjct: 757 HENLTEKLIALTNEHKE-LDEKYQILNSSHSSLKENFSILETELKNVRDSLD-EMTQLRD 814

Query: 254 SLIYVQKENIQLQDVLDQYSKLIKNIKDCPDVIKK 288
            L    KEN   Q  L +Y   I   +D    ++K
Sbjct: 815 VLETKDKEN---QTALLEYKSTIHKQEDSIKTLEK 846

 Score = 30.8 bits (68), Expect = 3e-04
 Identities = 59/253 (23%), Positives = 95/253 (37%), Gaps = 53/253 (20%)

Query: 46   ELKKNIITNNLHDEKVILTDNNMKE---KCNHIDRDTITK----EISIERLLHKIR---- 94
            ELK ++ T    DEK+  +  + +E      H   D I++    E  IE L  K+R    
Sbjct: 1520 ELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSKLRIEAK 1579

Query: 95   ---NLENEKKFLLRFLENKKNIELEYKKALETQAAYVNSENKKSQFYENEWLNMKSLEYS 151
                LE  K+ L    E K  I  E    L+++   +  E K  Q      +     E  
Sbjct: 1580 SGSELETVKQELNNAQE-KIRINAEENTVLKSKLEDIERELKDKQAE----IKSNQEEKE 1634

Query: 152  LINSGKEPLRQSLEMLYDDSNINKLGGLTRNQEMFIIKLIEDHKNLNKERSIISKKYNEA 211
            L+ S  + L Q L     DS   K       +   + K   +   L+++  ++  KYN+ 
Sbjct: 1635 LLTSRLKELEQEL-----DSTQQKAQKSEEERRAEVRKFQVEKSQLDEKAMLLETKYNDL 1689

Query: 212  VDANF---------------------QLYQQNEMLKAQNISLLEKNKD--------LVNE 242
            V+                        +L ++ + LKA+N  L E N+D        L+  
Sbjct: 1690 VNKEQAWKRDEDTVKKTTDSQRQEIEKLAKELDNLKAENSKLKEANEDRSEIDDLMLLVT 1749

Query: 243  ELDKKLNALNSSL 255
            +LD+K     S L
Sbjct: 1750 DLDEKNAKYRSKL 1762

 Score = 25.8 bits (55), Expect = 0.009
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 9/67 (13%)

Query: 231 SLLEKNKDLVNE--ELDKKLNALNSSLIYVQKENIQLQDVLDQYSKLIKNIKDCPDVIKK 288
           +L EK   L NE  ELD+K   LNSS   + KEN  + +        +KN++D  D + +
Sbjct: 759 NLTEKLIALTNEHKELDEKYQILNSSHSSL-KENFSILET------ELKNVRDSLDEMTQ 811

Query: 289 MKQKRNT 295
           ++    T
Sbjct: 812 LRDVLET 818

 Score = 23.9 bits (50), Expect = 0.034
 Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 10/150 (6%)

Query: 29   EHNDKFNDNLSQLQIPQELKKNIITNNLHDEKVILTDNNMKEKCNHIDRDTITKEISIER 88
            E N      L  ++   + K+  I +N  +EK +LT + +KE    +D      + S E 
Sbjct: 1603 EENTVLKSKLEDIERELKDKQAEIKSN-QEEKELLT-SRLKELEQELDSTQQKAQKSEEE 1660

Query: 89   LLHKIRNLENEKKFLLRFLENKKNIELEYKKALETQAAYVNSEN--KKSQFYENEWLNMK 146
               ++R  + EK    +  E    +E +Y   +  + A+   E+  KK+   + + +   
Sbjct: 1661 RRAEVRKFQVEKS---QLDEKAMLLETKYNDLVNKEQAWKRDEDTVKKTTDSQRQEIEKL 1717

Query: 147  SLEYSLINSGKEPLRQSLEMLYDDSNINKL 176
            + E   + +    L+++ E   D S I+ L
Sbjct: 1718 AKELDNLKAENSKLKEANE---DRSEIDDL 1744

 Score = 23.1 bits (48), Expect = 0.058
 Identities = 47/238 (19%), Positives = 94/238 (39%), Gaps = 17/238 (7%)

Query: 51  IITNNLHDEKVILTDNNMKEKCNHIDRDTITK-EISIERLLHKIRNLENEKKFLLRFLEN 109
           +   N++  +  L+ +  +E  N I  + + K +    +L  +I +L+ E +     L  
Sbjct: 703 LFNENIYRIRTALSHDPDEEPINKISFEEVEKLQRQCTKLKGEITSLQTETESTHENLTE 762

Query: 110 KKNIELEYKKALETQAAYVNSENKKSQFYENEWLNMKSLEYSLINSGKEPLRQSLEMLYD 169
           K        K L+ +   +NS +  S   EN   ++   E   +    + + Q  ++L  
Sbjct: 763 KLIALTNEHKELDEKYQILNSSH--SSLKEN--FSILETELKNVRDSLDEMTQLRDVLET 818

Query: 170 DSNINKLGGLTRNQEMFIIKLIEDHKNLNKERSIISKKYNEAVDA----NFQLYQQNEML 225
               N+   L    +  I K  +  K L K    I  +  +A D        L+  +  +
Sbjct: 819 KDKENQTALL--EYKSTIHKQEDSIKTLEKGLETILSQKKKAEDGINKMGKDLFALSREM 876

Query: 226 KA--QNISLLEKNKDLVNEELDKKLNALN----SSLIYVQKENIQLQDVLDQYSKLIK 277
           +A  +N   L+K KD  N    K+  +L     + +  ++  N  L+++  Q + L K
Sbjct: 877 QAVEENCKNLQKEKDKSNVNHQKETKSLKEDIAAKITEIKAINENLEEMKIQCNNLSK 934

 Score = 21.6 bits (44), Expect = 0.17
 Identities = 43/195 (22%), Positives = 75/195 (38%), Gaps = 25/195 (12%)

Query: 45   QELKKNIITNNLHDEKVILTDNNMKEKCNHIDRDTITKEISIERLLHKIRNLENEKKFLL 104
            ++++ N   N +   K+   +  +K+K   I  +   KE+   RL    + L++ +    
Sbjct: 1596 EKIRINAEENTVLKSKLEDIERELKDKQAEIKSNQEEKELLTSRLKELEQELDSTQ---- 1651

Query: 105  RFLENKKNIELEYKKALETQAAYVNSENKKSQFYENEWLNMKSLEYSLINSGKEPLRQSL 164
                     +   K   E +A     + +KSQ  E   L +++    L+N  +   R   
Sbjct: 1652 ---------QKAQKSEEERRAEVRKFQVEKSQLDEKAML-LETKYNDLVNKEQAWKR--- 1698

Query: 165  EMLYDDSNINKLGGLTRNQEMFIIKLIEDHKNLNKERSIISKKYNEAVDANFQLYQQNEM 224
                D+  + K    T +Q   I KL ++  NL  E S + K+ NE       L      
Sbjct: 1699 ----DEDTVKK---TTDSQRQEIEKLAKELDNLKAENSKL-KEANEDRSEIDDLMLLVTD 1750

Query: 225  LKAQNISLLEKNKDL 239
            L  +N     K KDL
Sbjct: 1751 LDEKNAKYRSKLKDL 1765

 Score = 20.0 bits (40), Expect = 0.49
 Identities = 51/265 (19%), Positives = 112/265 (42%), Gaps = 33/265 (12%)

Query: 50  NIITNNLHDEKVILTDNNMKEKCNHIDRDTITKE-----ISIERLLHKIRN--LENEKKF 102
           +II   +   K+   D  +   C+ ++  T+  +     + ++    + R   + +  K 
Sbjct: 2   DIIQGLIQQPKIQSVDETIPTLCDRVENSTLISDRRSAVLGLKAFSRQYRESVIASGLKP 61

Query: 103 LLRFLENKKNIELEYKKALET-QAAYVNSENKKSQFYENEWLNMKSLEYSLINSGKEP-- 159
           LL  L+     E   K  LET    ++  +          W++ +S     + +GK P  
Sbjct: 62  LLNTLKRDYMDEDSVKAILETILILFIRGDGHDD--LTRGWISQQSR----LQNGKYPSP 115

Query: 160 --LRQSLEMLYDDSNINKLGGLTRNQEMFIIKLIEDHKNLNKERSIISKKYNEAVDANFQ 217
             ++Q  E + D  ++     LT+++++  + L+E  +  N    + + +  EAV A   
Sbjct: 116 LVMKQEKEQV-DQFSLWIADALTQSEDLIHL-LVEFWEIDNFHIRLYTIQLLEAVMATRP 173

Query: 218 LYQQNEMLKAQN-----ISLLEKNKDLVNEELDKKLNALNSSLIYVQK----ENI--QLQ 266
           L  ++ ++         +SLL+   + + +E    L A+ +   +VQK    ENI  +L 
Sbjct: 174 LKARSALISLPTSISTMVSLLDDMHEPIRDEAILLLMAVVNDSPHVQKLVAFENIFERLF 233

Query: 267 DVLDQYSKLIKN--IKDCPDVIKKM 289
            ++++   L  +  + DC  +I  +
Sbjct: 234 SIIEEEGGLRGSLVVNDCLSLINNI 258

 Score = 19.6 bits (39), Expect = 0.64
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 50  NIITNNLHDEKVILTDNNMKEKCNHIDRDTITKE 83
           N  TNN+ D       +N  +K +  D+DT  K+
Sbjct: 449 NNSTNNVGDNAKENGGSNKSDKESDSDKDTDGKD 482
Lambda     K      H
   0.313    0.130    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1908
Number of extensions: 158
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 11
Length of query: 339
Length of database: 1790
Length adjustment: 40
Effective length of query: 299
Effective length of database: 1750
Effective search space:   523250
Effective search space used:   523250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 29 (16.0 bits)
S2: 29 (15.8 bits)