>YPR143W RRP15 SGDID:S000006347, Chr XVI from 818319-819071,
           Verified ORF, "Nucleolar protein, constituent of pre-60S
           ribosomal particles; required for processing of the 27S
           pre-rRNA at the A2 site to yield 5.8S and 25S rRNA"
          Length = 250

 Score = 33.5 bits (75), Expect = 4e-06
 Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 67  NELKNEVNIEGDQVKQNEQN--HDDDDVINENEKAVLEFYDEKIDNYDEEYVNKKYRFGT 124
           NE + +  +EGD+ +++EQN   D+   I +NE++  E  D++ +  D+++  KK    +
Sbjct: 35  NEPEKDTIMEGDEAEEDEQNSSSDESSKIIDNEQSDAEEDDDE-EEEDDDFPRKKKSKNS 93

Query: 125 KSCDSS 130
           K  D S
Sbjct: 94  KHDDGS 99

 Score = 18.9 bits (37), Expect = 0.10
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query: 191 ENKQNNESDKSLK 203
           E++QN+ SD+S K
Sbjct: 50  EDEQNSSSDESSK 62

 Score = 18.1 bits (35), Expect = 0.17
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 53  NDNNKCIKKERIEPNELKNEVNIEGD-QVKQNEQNHDDDDVINENEKAVLEFYDEKIDNY 111
           ++++K I  E+ +  E  +E   + D   K+  +N   DD       AV       +  Y
Sbjct: 58  DESSKIIDNEQSDAEEDDDEEEEDDDFPRKKKSKNSKHDDGSTGFSAAVNAILSSHLKAY 117

Query: 112 DEE 114
           D +
Sbjct: 118 DRK 120

 Score = 18.1 bits (35), Expect = 0.17
 Identities = 9/45 (20%), Positives = 21/45 (46%)

Query: 181 EENDKDHGNNENKQNNESDKSLKYHAVFCINCNNHIAYFEIQERI 225
           EE+D      ++K +   D S  + A      ++H+  ++ ++ I
Sbjct: 79  EEDDDFPRKKKSKNSKHDDGSTGFSAAVNAILSSHLKAYDRKDPI 123

 Score = 16.9 bits (32), Expect = 0.38
 Identities = 6/23 (26%), Positives = 12/23 (52%)

Query: 107 KIDNYDEEYVNKKYRFGTKSCDS 129
           ++D  D++   K   FG +  +S
Sbjct: 6   RVDTKDKKRTRKNAEFGREKRNS 28

 Score = 15.0 bits (27), Expect = 1.5
 Identities = 6/22 (27%), Positives = 15/22 (68%), Gaps = 3/22 (13%)

Query: 181 EENDKDHGNNENKQ---NNESD 199
           EE++++  ++E+ +   N +SD
Sbjct: 49  EEDEQNSSSDESSKIIDNEQSD 70

 Score = 15.0 bits (27), Expect = 1.5
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 5/35 (14%)

Query: 35  IEIAKSFLNITCSDEKFINDN-----NKCIKKERI 64
           +++  + L      EK +++N     NK  KKE I
Sbjct: 195 VKLFNAILATQVKTEKEVSENLSEIKNKEEKKELI 229

 Score = 14.2 bits (25), Expect = 2.5
 Identities = 5/15 (33%), Positives = 7/15 (46%)

Query: 185 KDHGNNENKQNNESD 199
           ++ GN E     E D
Sbjct: 26  RNSGNQELSNEPEKD 40

 Score = 14.2 bits (25), Expect = 2.5
 Identities = 6/17 (35%), Positives = 8/17 (47%)

Query: 178 KRYEENDKDHGNNENKQ 194
           K   EN  +  N E K+
Sbjct: 210 KEVSENLSEIKNKEEKK 226

 Score = 13.9 bits (24), Expect = 3.2
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 55  NNKCIKKERIEPNELKNEVNIEGDQVKQNEQNHDDDDVI-------NENEKAVLE 102
           N K +K+   E  E K +  +  ++ K   +    D +        +EN + VLE
Sbjct: 127 NKKVLKQSESEKLEYKAKKALLAEKKKLLGKARKTDIIPIASGEDRSENIRKVLE 181

 Score = 12.7 bits (21), Expect = 7.2
 Identities = 4/11 (36%), Positives = 5/11 (45%)

Query: 189 NNENKQNNESD 199
           +NE     E D
Sbjct: 65  DNEQSDAEEDD 75

Lambda     K      H
   0.316    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 196
Number of extensions: 20
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 12
Length of query: 234
Length of database: 250
Length adjustment: 23
Effective length of query: 211
Effective length of database: 227
Effective search space:    47897
Effective search space used:    47897
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 20 (12.0 bits)
S2: 20 (12.3 bits)