Query= PFB0840w Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) replication
factor C, subunit 2
(330 letters)
>FBgn0030871 type=protein;
loc=X:complement(17737453..17737539,17737602..17738469,
17738546..17738652); ID=FBpp0074246; name=CG8142-PA;
parent=FBgn0030871,FBtr0074472;
dbxref=FlyBase:FBpp0074246,
FlyBase_Annotation_IDs:CG8142-PA,GB_protein:AAF48768.2,
GB_protein:AAF48768;
MD5=969741f5a5f0fc8f14524ff96780d571; release=r5.1;
species=Dmel; length=353;
Length = 353
Score = 229 bits (584), Expect = 8e-65
Identities = 124/324 (38%), Positives = 200/324 (61%), Gaps = 11/324 (3%)
Query: 5 PWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGK 64
PWVEKYRP+ +DD+V Q+ V +L++ V ++P+++ +GPPGTGKTS I A + ++FG
Sbjct: 31 PWVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFG- 89
Query: 65 ENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEADMM 124
+ +R+LELNASD+RGINVVR KIK ++++S S + + P +K+++LDEAD M
Sbjct: 90 DMFKDRILELNASDERGINVVRTKIKNFSQLSASSVRPDGKP---CPPFKIIILDEADSM 146
Query: 125 TEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLYIC 184
T AQSALRR +E S TRF LICNY+ +I PI SRCS +RF+++ + ++L YIC
Sbjct: 147 THAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGEDKVIDRLKYIC 206
Query: 185 QNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCINTK-----ITLNSVLDVSGLPSDN 239
+ E + I DDA + I++ + GDLRRA++ LQ SC K I + ++SG+ +
Sbjct: 207 EMEGVKIEDDAYKSIVKISGGDLRRAITTLQ--SCYRLKGPEHIINTADLFEMSGVIPEY 264
Query: 240 IVYKIIDACKMKDLKLVEKTVQDIIEDGFDVAYIFKSFNNYFVTNTEYEDSLKYQILLEL 299
+ ++ C+ + + +E+ V++I + V + + F + V + D K I +L
Sbjct: 265 YLEDYLEVCRSGNYERLEQFVREIGFSAYSVGQMMEQFVEFIVHHPGLNDPQKATICDKL 324
Query: 300 SRHDYRLHCGATQYIQLLSFASSV 323
+RL G ++Y+Q++ +
Sbjct: 325 GECCFRLQDGGSEYLQIMDLGCCI 348
Lambda K H
0.321 0.136 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 276
Number of extensions: 11
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 353
Length adjustment: 29
Effective length of query: 301
Effective length of database: 324
Effective search space: 97524
Effective search space used: 97524
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 23 (13.5 bits)
S2: 23 (13.5 bits)