Query= PFB0840w Pf Annotation|Plasmodium_falciparum_TIGR|(protein coding) replication factor C, subunit 2 (330 letters)
>FBgn0030871 type=protein;
           loc=X:complement(17737453..17737539,17737602..17738469,
           17738546..17738652); ID=FBpp0074246; name=CG8142-PA;
           parent=FBgn0030871,FBtr0074472;
           dbxref=FlyBase:FBpp0074246,
           FlyBase_Annotation_IDs:CG8142-PA,GB_protein:AAF48768.2,
           GB_protein:AAF48768;
           MD5=969741f5a5f0fc8f14524ff96780d571; release=r5.1;
           species=Dmel; length=353;
          Length = 353

 Score =  229 bits (584), Expect = 8e-65
 Identities = 124/324 (38%), Positives = 200/324 (61%), Gaps = 11/324 (3%)

Query: 5   PWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGK 64
           PWVEKYRP+ +DD+V Q+  V +L++ V   ++P+++ +GPPGTGKTS I A + ++FG 
Sbjct: 31  PWVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFG- 89

Query: 65  ENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEADMM 124
           +   +R+LELNASD+RGINVVR KIK ++++S S  +   +     P +K+++LDEAD M
Sbjct: 90  DMFKDRILELNASDERGINVVRTKIKNFSQLSASSVRPDGKP---CPPFKIIILDEADSM 146

Query: 125 TEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLYIC 184
           T  AQSALRR +E  S  TRF LICNY+ +I  PI SRCS +RF+++  +   ++L YIC
Sbjct: 147 THAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGEDKVIDRLKYIC 206

Query: 185 QNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCINTK-----ITLNSVLDVSGLPSDN 239
           + E + I DDA + I++ + GDLRRA++ LQ  SC   K     I    + ++SG+  + 
Sbjct: 207 EMEGVKIEDDAYKSIVKISGGDLRRAITTLQ--SCYRLKGPEHIINTADLFEMSGVIPEY 264

Query: 240 IVYKIIDACKMKDLKLVEKTVQDIIEDGFDVAYIFKSFNNYFVTNTEYEDSLKYQILLEL 299
            +   ++ C+  + + +E+ V++I    + V  + + F  + V +    D  K  I  +L
Sbjct: 265 YLEDYLEVCRSGNYERLEQFVREIGFSAYSVGQMMEQFVEFIVHHPGLNDPQKATICDKL 324

Query: 300 SRHDYRLHCGATQYIQLLSFASSV 323
               +RL  G ++Y+Q++     +
Sbjct: 325 GECCFRLQDGGSEYLQIMDLGCCI 348
Lambda     K      H
   0.321    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 276
Number of extensions: 11
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 353
Length adjustment: 29
Effective length of query: 301
Effective length of database: 324
Effective search space:    97524
Effective search space used:    97524
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 23 (13.5 bits)
S2: 23 (13.5 bits)