Query= PFB0860c Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) RNA helicase,
putative
(562 letters)
>FBgn0032919 type=protein;
loc=2L:join(21143306..21143503,21143564..21143822,
21144012..21145078); ID=FBpp0080997; name=CG9253-PA;
parent=FBgn0032919,FBtr0081468;
dbxref=FlyBase:FBpp0080997,
FlyBase_Annotation_IDs:CG9253-PA,GB_protein:AAF53963.1,
GB_protein:AAF53963;
MD5=83cfae77a795bb55176cfd0864682226; release=r5.1;
species=Dmel; length=507;
Length = 507
Score = 411 bits (1057), Expect = e-119
Identities = 209/432 (48%), Positives = 299/432 (69%), Gaps = 4/432 (0%)
Query: 123 KNKNHDNSFHNNDD--VKNGEVKNLVTNEEREKQNVTFEDLNICEEILESIKELGWKKPT 180
+ ++ DN+ D +GE ++ E+Q +T++DL + E + ++ EL WK P+
Sbjct: 26 EQEDEDNNHKEGDSEAALSGEDDKGSEDDAAEEQKLTWKDLGLNEALCQACDELKWKAPS 85
Query: 181 EIQREILPHAFLKKDIIGLSETGSGKTACFIIPILQDLKVNKQSFYALVISPTRELCIQI 240
+IQRE +P A KD+IGL+ETGSGKT F +PIL L N Q ++ALV++PTREL QI
Sbjct: 86 KIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYFALVLTPTRELAFQI 145
Query: 241 SQNFQALGMNLLINICTIYGGVDIVTQSLNLAKKPNVIVSTPGRILDHLNNTKGFNLKNL 300
+ F+ALG + I C + GG+D+V Q L LAKKP++I++TPGR++DHL N KGFNLK +
Sbjct: 146 GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNLKAI 205
Query: 301 KYLVFDEADKLLSQDFESSINKLLLILPPNRITFLFSATMTKNVAKLKKACLKNPVKVEV 360
KYLV DEAD++L+ DFE ++K+L +LP R TFLFSATMTK V KL++A LK+PVKVEV
Sbjct: 206 KYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEV 265
Query: 361 SNKYSTVSTLIETYIFLPLKYKYTYLSSLCFHYQTRNIIIFTNTCATAQKLNFFCRNLGL 420
SNKY TV L ++Y+F+P+KYK YL + + +IF +TC K R LGL
Sbjct: 266 SNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGL 325
Query: 421 KSICLHGKLTQNQRLSSLNSFKVNKYNILISTQVGARGLDLQDIKIVINFDI-CSCKEYI 479
+I LHG+++QN+RL++LN FK +ILIST V +RGLD+ + +V+NFDI K+YI
Sbjct: 326 AAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYI 385
Query: 480 HRVGRTARAGRSGKSITFVTQYDVENFLAIEKQLNKKIDKFTDLDENDVLLYHEQTIEAL 539
HRVGRTARAGRSGK+IT V+QYD+E + IE L K++ + +E++V+ E+ EA
Sbjct: 386 HRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGKQLTLY-KCEEDEVMALQERVAEAQ 444
Query: 540 RLSEIEMKENQE 551
R +++E+K+ ++
Sbjct: 445 RTAKLELKDLED 456
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 601
Number of extensions: 23
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 507
Length adjustment: 35
Effective length of query: 527
Effective length of database: 472
Effective search space: 248744
Effective search space used: 248744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 26 (14.8 bits)
S2: 26 (14.6 bits)