Query= PFB0860c Pf Annotation|Plasmodium_falciparum_TIGR|(protein coding) RNA helicase, putative (562 letters)
>YHR065C RRP3 SGDID:S000001107, Chr VIII from 229039-227534, reverse
           complement, Verified ORF, "Protein involved in rRNA
           processing; required for maturation of the 35S primary
           transcript of pre-rRNA and for cleavage leading to
           mature 18S rRNA; homologous to eIF-4a, which is a DEAD
           box RNA-dependent ATPase with helicase activity"
          Length = 501

 Score =  354 bits (908), Expect = e-102
 Identities = 190/410 (46%), Positives = 276/410 (67%), Gaps = 7/410 (1%)

Query: 143 KNLVTNEEREKQNVTFEDLNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSET 202
           +N  TNE+   ++  F +LN+  E++++ K L + KPT IQ + +P A    DIIGL++T
Sbjct: 70  QNENTNEDESFES--FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQT 127

Query: 203 GSGKTACFIIPILQDLKVNKQSFYALVISPTRELCIQISQNFQALGMNLLINICTIYGGV 262
           GSGKTA F IPIL  L  +++ +YA +++PTREL  QI + F +LG  + +    I GG+
Sbjct: 128 GSGKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGM 187

Query: 263 DIVTQSLNLAKKPNVIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINK 322
           +++ Q+ +L +KP++I++TPGR++DHL NTKGF+L+ LK+LV DEAD+LL  +F   +++
Sbjct: 188 NMMDQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDR 247

Query: 323 LLLILP-PNRITFLFSATMTKNVAKLKKACLKNPVKVEVSNKYSTVSTLIETYIFLPLKY 381
           +L I+P   R T+LFSATMT  + KL++A L NPVK  VSNKY TV TL++T + +P   
Sbjct: 248 ILKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL 307

Query: 382 KYTYLSSLCFHYQTRNIIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNSF 441
           K TYL  L   +  + +IIFT T A A++L+  C  L   +  LHG L QNQR+ SL+ F
Sbjct: 308 KNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLF 367

Query: 442 KVNKYNILISTQVGARGLDLQDIKIVINFDI-CSCKEYIHRVGRTARAGRSGKSITFVTQ 500
           K  K +IL++T V ARGLD+  + IV+N+DI    K YIHRVGRTARAGRSGKSI+ V+Q
Sbjct: 368 KAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 427

Query: 501 YDVENFLAIEKQLNKKIDKFTDLDENDVLLYHEQTIEALRLSEIEMKENQ 550
           YD+E  L IE+ L KK+ K   +D+N +L   +   +A    E+ M+ N+
Sbjct: 428 YDLELILRIEEVLGKKLPK-ESVDKNIILTLRDSVDKA--NGEVVMEMNR 474

 Score = 17.3 bits (33), Expect = 1.5
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 124 NKNHDNSFHNNDDVKNGEVKNLVTNEEREK 153
           +KN   +  ++ D  NGEV   +    +EK
Sbjct: 450 DKNIILTLRDSVDKANGEVVMEMNRRNKEK 479
Lambda     K      H
   0.318    0.135    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 594
Number of extensions: 25
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 562
Length of database: 501
Length adjustment: 35
Effective length of query: 527
Effective length of database: 466
Effective search space:   245582
Effective search space used:   245582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 26 (14.8 bits)
S2: 26 (14.6 bits)