Query= PFB0860c Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) RNA helicase,
putative
(562 letters)
>YHR065C RRP3 SGDID:S000001107, Chr VIII from 229039-227534, reverse
complement, Verified ORF, "Protein involved in rRNA
processing; required for maturation of the 35S primary
transcript of pre-rRNA and for cleavage leading to
mature 18S rRNA; homologous to eIF-4a, which is a DEAD
box RNA-dependent ATPase with helicase activity"
Length = 501
Score = 354 bits (908), Expect = e-102
Identities = 190/410 (46%), Positives = 276/410 (67%), Gaps = 7/410 (1%)
Query: 143 KNLVTNEEREKQNVTFEDLNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSET 202
+N TNE+ ++ F +LN+ E++++ K L + KPT IQ + +P A DIIGL++T
Sbjct: 70 QNENTNEDESFES--FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQT 127
Query: 203 GSGKTACFIIPILQDLKVNKQSFYALVISPTRELCIQISQNFQALGMNLLINICTIYGGV 262
GSGKTA F IPIL L +++ +YA +++PTREL QI + F +LG + + I GG+
Sbjct: 128 GSGKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGM 187
Query: 263 DIVTQSLNLAKKPNVIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINK 322
+++ Q+ +L +KP++I++TPGR++DHL NTKGF+L+ LK+LV DEAD+LL +F +++
Sbjct: 188 NMMDQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDR 247
Query: 323 LLLILP-PNRITFLFSATMTKNVAKLKKACLKNPVKVEVSNKYSTVSTLIETYIFLPLKY 381
+L I+P R T+LFSATMT + KL++A L NPVK VSNKY TV TL++T + +P
Sbjct: 248 ILKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL 307
Query: 382 KYTYLSSLCFHYQTRNIIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNSF 441
K TYL L + + +IIFT T A A++L+ C L + LHG L QNQR+ SL+ F
Sbjct: 308 KNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLF 367
Query: 442 KVNKYNILISTQVGARGLDLQDIKIVINFDI-CSCKEYIHRVGRTARAGRSGKSITFVTQ 500
K K +IL++T V ARGLD+ + IV+N+DI K YIHRVGRTARAGRSGKSI+ V+Q
Sbjct: 368 KAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 427
Query: 501 YDVENFLAIEKQLNKKIDKFTDLDENDVLLYHEQTIEALRLSEIEMKENQ 550
YD+E L IE+ L KK+ K +D+N +L + +A E+ M+ N+
Sbjct: 428 YDLELILRIEEVLGKKLPK-ESVDKNIILTLRDSVDKA--NGEVVMEMNR 474
Score = 17.3 bits (33), Expect = 1.5
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 124 NKNHDNSFHNNDDVKNGEVKNLVTNEEREK 153
+KN + ++ D NGEV + +EK
Sbjct: 450 DKNIILTLRDSVDKANGEVVMEMNRRNKEK 479
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 594
Number of extensions: 25
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 562
Length of database: 501
Length adjustment: 35
Effective length of query: 527
Effective length of database: 466
Effective search space: 245582
Effective search space used: 245582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 26 (14.8 bits)
S2: 26 (14.6 bits)