Query= PFC0005w Pf Annotation|Plasmodium_falciparum_Sanger|(protein coding) PfEMP1 (2209 letters)
>FBgn0025140 type=protein;
           loc=3R:join(17861557..17861737,17861798..17862019,
           17862229..17862915,17862974..17863599,
           17863679..17864005); ID=FBpp0083572; name=pit-PB;
           parent=FBgn0025140,FBtr0084174;
           dbxref=FlyBase:FBpp0083572,
           FlyBase_Annotation_IDs:CG6375-PB,GB_protein:AAN13900.2,
           GB_protein:AAN13900;
           MD5=5f5811599cc1bddcf0acadec426990a8; release=r5.1;
           species=Dmel; length=680;
          Length = 680

 Score = 40.4 bits (93), Expect = 9e-07
 Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 23/172 (13%)

Query: 686 MEEIIKKNQENISRVTKQNNSITKFLQQELQEANNCLQKRKQDCKPPQQSAEEGVAKTGQ 745
           M++I+K+ +       K+ N   +  +   Q  N       +  K P++ +++ VAK   
Sbjct: 9   MKKIVKREKMKKELSQKKGNKNAQKQEPPKQNGN-------KPSKKPEKLSKKHVAKDED 61

Query: 746 PRAEDE-EDSPRPXXXXXXXXXXXXXXXXXXXITPRDLNIEVDDLDSKDPEDQVEEEKAK 804
              E++ +++P P                     P+   I+V + DS+  +D+ E+E  +
Sbjct: 62  DDLEEDFQEAPLPKKKQQKQP-------------PKKQQIQVANSDSESDDDEQEDEADE 108

Query: 805 DNTDETVETAKETKEDTDRKGEEKQPKEEVDNVKPCEIVKTLFTNGDNTALN 856
           D+  +  E A+  +ED D   E+   +E+ D  +P    KT      + A N
Sbjct: 109 DS--DLDEVAEVDEEDVDSGSEDDDQQEDEDEEEPVPAKKTKLLPNKSKAQN 158

 Score = 26.6 bits (57), Expect = 0.014
 Identities = 31/142 (21%), Positives = 63/142 (44%), Gaps = 38/142 (26%)

Query: 678 PKEKPVQKMEEIIKKNQENISRVTKQNNSITKFLQQELQEANNCLQKRKQDCKPPQQSAE 737
           P +KP +  ++ + K++++              L+++ QEA   L K+KQ  +PP++   
Sbjct: 44  PSKKPEKLSKKHVAKDEDD-------------DLEEDFQEAP--LPKKKQQKQPPKKQQI 88

Query: 738 EGVAKTGQPRAEDEEDSPRPXXXXXXXXXXXXXXXXXXXITPRDLNIEVDDLDSKDPEDQ 797
           + VA +     +DE++                           DL+ EV ++D +D +  
Sbjct: 89  Q-VANSDSESDDDEQEDEAD--------------------EDSDLD-EVAEVDEEDVDSG 126

Query: 798 VEEEKAKDNTDETVET-AKETK 818
            E++  +++ DE     AK+TK
Sbjct: 127 SEDDDQQEDEDEEEPVPAKKTK 148

 Score = 26.2 bits (56), Expect = 0.018
 Identities = 34/163 (20%), Positives = 68/163 (41%), Gaps = 34/163 (20%)

Query: 674 KEAHPKE---KPVQKMEEIIKKNQENISRVTKQNNSITKFLQQELQEANNCLQKRKQDCK 730
           K+  PK+   KP +K E++ KK+      V K  +     L+++ QEA   L K+KQ  +
Sbjct: 33  KQEPPKQNGNKPSKKPEKLSKKH------VAKDEDDD---LEEDFQEAP--LPKKKQQKQ 81

Query: 731 PPQQSAEEGVAKTGQPRAEDEEDSPRPXXXXXXXXXXXXXXXXXXXITPRDLNIEVDDLD 790
           PP++   + VA +     +DE++                              ++ +D+D
Sbjct: 82  PPKKQQIQ-VANSDSESDDDEQEDEADEDSDLDEVA----------------EVDEEDVD 124

Query: 791 S---KDPEDQVEEEKAKDNTDETVETAKETKEDTDRKGEEKQP 830
           S    D + + E+E+      +T     ++K    +  ++ +P
Sbjct: 125 SGSEDDDQQEDEDEEEPVPAKKTKLLPNKSKAQNGKPAKDDEP 167

 Score = 18.9 bits (37), Expect = 2.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 712 QQELQEANNCLQKRKQ 727
           ++EL++  N L KR+Q
Sbjct: 352 EEELKQIINLLPKRRQ 367

 Score = 18.5 bits (36), Expect = 3.8
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 1821 EGDSGTDSGYTDHYSDITSSSESEYEEMD 1849
            E D        D  SD+   +E + E++D
Sbjct: 96   ESDDDEQEDEADEDSDLDEVAEVDEEDVD 124

 Score = 18.1 bits (35), Expect = 4.9
 Identities = 7/29 (24%), Positives = 14/29 (48%)

Query: 204 KLEENLKTIFGKIHEGLKNGKTNGIEERY 232
           KL    + I+  +H+       +G+E+ Y
Sbjct: 384 KLALKSEPIYVGVHDNQDTATVDGLEQGY 412

 Score = 17.7 bits (34), Expect = 6.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 2042 NELFGTNHVKQTSIHSVAKLT 2062
            +ELF    +  TSIH   K T
Sbjct: 450  HELFNYIDLPVTSIHGKQKQT 470
Lambda     K      H
   0.312    0.132    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3301
Number of extensions: 193
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 2209
Length of database: 680
Length adjustment: 47
Effective length of query: 2162
Effective length of database: 633
Effective search space:  1368546
Effective search space used:  1368546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 33 (17.8 bits)
S2: 33 (17.3 bits)