Query= PFC0005w Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) PfEMP1
(2209 letters)
>FBgn0025140 type=protein;
loc=3R:join(17861557..17861737,17861798..17862019,
17862229..17862915,17862974..17863599,
17863679..17864005); ID=FBpp0083572; name=pit-PB;
parent=FBgn0025140,FBtr0084174;
dbxref=FlyBase:FBpp0083572,
FlyBase_Annotation_IDs:CG6375-PB,GB_protein:AAN13900.2,
GB_protein:AAN13900;
MD5=5f5811599cc1bddcf0acadec426990a8; release=r5.1;
species=Dmel; length=680;
Length = 680
Score = 40.4 bits (93), Expect = 9e-07
Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 23/172 (13%)
Query: 686 MEEIIKKNQENISRVTKQNNSITKFLQQELQEANNCLQKRKQDCKPPQQSAEEGVAKTGQ 745
M++I+K+ + K+ N + + Q N + K P++ +++ VAK
Sbjct: 9 MKKIVKREKMKKELSQKKGNKNAQKQEPPKQNGN-------KPSKKPEKLSKKHVAKDED 61
Query: 746 PRAEDE-EDSPRPXXXXXXXXXXXXXXXXXXXITPRDLNIEVDDLDSKDPEDQVEEEKAK 804
E++ +++P P P+ I+V + DS+ +D+ E+E +
Sbjct: 62 DDLEEDFQEAPLPKKKQQKQP-------------PKKQQIQVANSDSESDDDEQEDEADE 108
Query: 805 DNTDETVETAKETKEDTDRKGEEKQPKEEVDNVKPCEIVKTLFTNGDNTALN 856
D+ + E A+ +ED D E+ +E+ D +P KT + A N
Sbjct: 109 DS--DLDEVAEVDEEDVDSGSEDDDQQEDEDEEEPVPAKKTKLLPNKSKAQN 158
Score = 26.6 bits (57), Expect = 0.014
Identities = 31/142 (21%), Positives = 63/142 (44%), Gaps = 38/142 (26%)
Query: 678 PKEKPVQKMEEIIKKNQENISRVTKQNNSITKFLQQELQEANNCLQKRKQDCKPPQQSAE 737
P +KP + ++ + K++++ L+++ QEA L K+KQ +PP++
Sbjct: 44 PSKKPEKLSKKHVAKDEDD-------------DLEEDFQEAP--LPKKKQQKQPPKKQQI 88
Query: 738 EGVAKTGQPRAEDEEDSPRPXXXXXXXXXXXXXXXXXXXITPRDLNIEVDDLDSKDPEDQ 797
+ VA + +DE++ DL+ EV ++D +D +
Sbjct: 89 Q-VANSDSESDDDEQEDEAD--------------------EDSDLD-EVAEVDEEDVDSG 126
Query: 798 VEEEKAKDNTDETVET-AKETK 818
E++ +++ DE AK+TK
Sbjct: 127 SEDDDQQEDEDEEEPVPAKKTK 148
Score = 26.2 bits (56), Expect = 0.018
Identities = 34/163 (20%), Positives = 68/163 (41%), Gaps = 34/163 (20%)
Query: 674 KEAHPKE---KPVQKMEEIIKKNQENISRVTKQNNSITKFLQQELQEANNCLQKRKQDCK 730
K+ PK+ KP +K E++ KK+ V K + L+++ QEA L K+KQ +
Sbjct: 33 KQEPPKQNGNKPSKKPEKLSKKH------VAKDEDDD---LEEDFQEAP--LPKKKQQKQ 81
Query: 731 PPQQSAEEGVAKTGQPRAEDEEDSPRPXXXXXXXXXXXXXXXXXXXITPRDLNIEVDDLD 790
PP++ + VA + +DE++ ++ +D+D
Sbjct: 82 PPKKQQIQ-VANSDSESDDDEQEDEADEDSDLDEVA----------------EVDEEDVD 124
Query: 791 S---KDPEDQVEEEKAKDNTDETVETAKETKEDTDRKGEEKQP 830
S D + + E+E+ +T ++K + ++ +P
Sbjct: 125 SGSEDDDQQEDEDEEEPVPAKKTKLLPNKSKAQNGKPAKDDEP 167
Score = 18.9 bits (37), Expect = 2.9
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 712 QQELQEANNCLQKRKQ 727
++EL++ N L KR+Q
Sbjct: 352 EEELKQIINLLPKRRQ 367
Score = 18.5 bits (36), Expect = 3.8
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 1821 EGDSGTDSGYTDHYSDITSSSESEYEEMD 1849
E D D SD+ +E + E++D
Sbjct: 96 ESDDDEQEDEADEDSDLDEVAEVDEEDVD 124
Score = 18.1 bits (35), Expect = 4.9
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 204 KLEENLKTIFGKIHEGLKNGKTNGIEERY 232
KL + I+ +H+ +G+E+ Y
Sbjct: 384 KLALKSEPIYVGVHDNQDTATVDGLEQGY 412
Score = 17.7 bits (34), Expect = 6.4
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 2042 NELFGTNHVKQTSIHSVAKLT 2062
+ELF + TSIH K T
Sbjct: 450 HELFNYIDLPVTSIHGKQKQT 470
Lambda K H
0.312 0.132 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3301
Number of extensions: 193
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 2209
Length of database: 680
Length adjustment: 47
Effective length of query: 2162
Effective length of database: 633
Effective search space: 1368546
Effective search space used: 1368546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 33 (17.8 bits)
S2: 33 (17.3 bits)