Query= PFC0270w Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) hypothetical
protein
(349 letters)
>YNL281W HCH1 SGDID:S000005225, Chr XIV from 108467-108928, Verified
ORF, "Heat shock protein regulator that binds to Hsp90p
and may stimulate ATPase activity; originally identified
as a high-copy number suppressor of a HSP90
loss-of-function mutation; GFP-fusion protein localizes
to the cytoplasm and nucleus"
Length = 153
Score = 48.1 bits (113), Expect = 1e-10
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 5 VWNSNSWHWEERNYNKWAESYIKYNLSNLKIEKEDLTIYFDNLQVS---GNACVSIRKGK 61
V N N+WHW ++N W++ Y+ L++L D + QVS G++ VS RKGK
Sbjct: 3 VLNPNNWHWVDKNTLPWSKDYLNGKLTSLSTVSSDGKSKIELTQVSSITGDSNVSQRKGK 62
Query: 62 QINSFEYIIKFEWLYSKKKEGKD-------YFGGSVEIPDFSTFSLEENDYAINIERTDE 114
I F+ + + KD G +EIP+F +E+D I + D
Sbjct: 63 PICYFDLQLSMNVKVTNLDTNKDDEDDDGILADGKLEIPEFMH---DESDIPILSQGFDA 119
Query: 115 SENL 118
+ L
Sbjct: 120 FDGL 123
Score = 35.8 bits (81), Expect = 7e-07
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 201 VWNINNYHWEEKCLTKWAIEELQ-NIFNKSIIELSNNIFLEFFS-CDVEGEASSSLRKKK 258
V N NN+HW +K W+ + L + + S + +E + G+++ S RK K
Sbjct: 3 VLNPNNWHWVDKNTLPWSKDYLNGKLTSLSTVSSDGKSKIELTQVSSITGDSNVSQRKGK 62
Query: 259 KILMYDLKITSEWKAYQKNKNQQIE----IESKGHVSINDILSDFS 300
I +DL+++ K + N+ E I + G + I + + D S
Sbjct: 63 PICYFDLQLSMNVKVTNLDTNKDDEDDDGILADGKLEIPEFMHDES 108
Lambda K H
0.314 0.133 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 141
Number of extensions: 9
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 2
Length of query: 349
Length of database: 153
Length adjustment: 23
Effective length of query: 326
Effective length of database: 130
Effective search space: 42380
Effective search space used: 42380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 20 (12.0 bits)
S2: 20 (12.3 bits)