Query= PFC0290w Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) 40S ribosomal
protein S23, putative
(145 letters)
>YPR132W RPS23B SGDID:S000006336, Chr XVI from
794961-795025,795391-795763, Verified ORF, "Ribosomal
protein 28 (rp28) of the small (40S) ribosomal subunit,
required for translational accuracy; nearly identical to
Rps23Ap and similar to E. coli S12 and rat S23 ribosomal
proteins; deletion of both RPS23A and RPS23B is lethal"
Length = 145
Score = 204 bits (520), Expect = 3e-58
Identities = 100/145 (68%), Positives = 116/145 (80%)
Query: 1 MGSGKPSGXXXXXXXXXXXXXXXWADKSYKKSHLGTRWKSNPFRGSSHAKGIVVEKVAIE 60
MG GKP G WA+ +YKK LGT +KS+PF GSSHAKGIV+EK+ IE
Sbjct: 1 MGKGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIE 60
Query: 61 AKQPNSAYRKCVRVQLIKNGKKITAFVPGDGCLNFIDENDEVLVSGFGRSGHSVGDLPGV 120
+KQPNSA RKCVRVQLIKNGKK+TAFVP DGCLNF+DENDEVL++GFGR G + GD+PGV
Sbjct: 61 SKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGV 120
Query: 121 KFKVVKVARVSLLALFKEKKEKPRS 145
+FKVVKV+ VSLLAL+KEKKEKPRS
Sbjct: 121 RFKVVKVSGVSLLALWKEKKEKPRS 145
Lambda K H
0.315 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 127
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 145
Length adjustment: 16
Effective length of query: 129
Effective length of database: 129
Effective search space: 16641
Effective search space used: 16641
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 16 (10.2 bits)
S2: 16 (10.8 bits)