Query= PFC0365w Pf Annotation|Plasmodium_falciparum_Sanger|(protein coding) conserved protein, putative (532 letters)
>YCR057C PWP2 SGDID:S000000653, Chr III from 223224-220453, reverse
           complement, Verified ORF, "Conserved 90S pre-ribosomal
           component essential for proper endonucleolytic cleavage
           of the 35 S rRNA precursor at A0, A1, and A2 sites;
           contains eight WD-repeats; PWP2 deletion leads to
           defects in cell cycle and bud morphogenesis"
          Length = 923

 Score = 92.0 bits (227), Expect = 9e-23
 Identities = 62/219 (28%), Positives = 113/219 (51%), Gaps = 8/219 (3%)

Query: 319 IYDNYQFVSAHVITKHKDHVTSLALHPLENYF-ISSSKDSMWILHDLETAKTIKTSKDNP 377
           +YD   F     ++  ++ V +++++    +    SSK    ++++ ++   I   + + 
Sbjct: 286 LYDLPDFTLIQQLSMGQNPVNTVSVNQTGEWLAFGSSKLGQLLVYEWQSESYILKQQGHF 345

Query: 378 SSFKHLAIHPDGMMFGIAAQDSNIHIYDIKSQEYKATLNGHTKSLNCLSFSENGYYLASS 437
            S   LA  PDG     A++D  I ++DI S    AT   HT S+  + F++ G  + SS
Sbjct: 346 DSTNSLAYSPDGSRVVTASEDGKIKVWDITSGFCLATFEEHTSSVTAVQFAKRGQVMFSS 405

Query: 438 SKDNTVKLWDLRKAQSFQTITLNETPNF--ISFDYSGKYLSI-AVEN-DIQIYNFETKNQ 493
           S D TV+ WDL + ++F+T T  E   F  ++ D SG+ +   +++N DI +++ +T   
Sbjct: 406 SLDGTVRAWDLIRYRNFRTFTGTERIQFNCLAVDPSGEVVCAGSLDNFDIHVWSVQT--- 462

Query: 494 ANLIKTLSSHTDIVTQTCFGSTTSYILSSSMDKTIKLWN 532
             L+  LS H   V+   F    S + S+S DKTI++W+
Sbjct: 463 GQLLDALSGHEGPVSCLSFSQENSVLASASWDKTIRIWS 501

 Score = 68.2 bits (165), Expect = 1e-15
 Identities = 60/273 (21%), Positives = 103/273 (37%), Gaps = 42/273 (15%)

Query: 229 FSGGNDGNVYYVSLNDNKILSKLQGHLKKVNSIISHPSNFICITASNDKTIRIWKXXXXX 288
           F     G +          + K QGH    NS+   P     +TAS D  I++W      
Sbjct: 319 FGSSKLGQLLVYEWQSESYILKQQGHFDSTNSLAYSPDGSRVVTASEDGKIKVW------ 372

Query: 289 XXXXXXXXXXXXXXXXXXXXXXXXXXXXEYIYDNYQFVSAHVITKHKDHVTSLALHPLEN 348
                                           D           +H   VT++       
Sbjct: 373 --------------------------------DITSGFCLATFEEHTSSVTAVQFAKRGQ 400

Query: 349 YFISSSKDSMWILHDLETAKTIKTSKDNPS-SFKHLAIHPDGMMFGIAAQDS-NIHIYDI 406
              SSS D      DL   +  +T        F  LA+ P G +    + D+ +IH++ +
Sbjct: 401 VMFSSSLDGTVRAWDLIRYRNFRTFTGTERIQFNCLAVDPSGEVVCAGSLDNFDIHVWSV 460

Query: 407 KSQEYKATLNGHTKSLNCLSFSENGYYLASSSKDNTVKLWDL-RKAQSFQTITLNETPNF 465
           ++ +    L+GH   ++CLSFS+    LAS+S D T+++W +  ++Q  + I +      
Sbjct: 461 QTGQLLDALSGHEGPVSCLSFSQENSVLASASWDKTIRIWSIFGRSQQVEPIEVYSDVLA 520

Query: 466 ISFDYSGKYLSIA-VENDIQIYNFETKNQANLI 497
           +S    GK ++++ ++  I I+N E   Q   I
Sbjct: 521 LSMRPDGKEVAVSTLKGQISIFNIEDAKQVGNI 553

 Score = 42.4 bits (98), Expect = 8e-08
 Identities = 47/239 (19%), Positives = 92/239 (38%), Gaps = 32/239 (13%)

Query: 325 FVSAHVITKHKDHVTSLALHPLENYFISSSKD---SMWILHDLE---TAKTIKTSKD--- 375
           FV   V   H   +TSL       + +++SKD    +W +   E    A T    +D   
Sbjct: 136 FVRHRVHAGHFQDITSLTWSQDSRFILTTSKDLSAKIWSVDSEEKNLAATTFNGHRDYVM 195

Query: 376 ----NPSSFKHLAIHPDGMMF-------------GIAAQDSNIHIYDIKSQEYKAT---- 414
               +    K   +  DG +F               +  D      DI    ++ T    
Sbjct: 196 GAFFSHDQEKIYTVSKDGAVFVWEFTKRPSDDDDNESEDDDKQEEVDISKYSWRITKKHF 255

Query: 415 LNGHTKSLNCLSFSENGYYLASSSKDNTVKLWDLRKAQSFQTITLNETP-NFISFDYSGK 473
              +   + C++F      LA        +L+DL      Q +++ + P N +S + +G+
Sbjct: 256 FYANQAKVKCVTFHPATRLLAVGFTSGEFRLYDLPDFTLIQQLSMGQNPVNTVSVNQTGE 315

Query: 474 YLSIAVENDIQIYNFETKNQANLIKTLSSHTDIVTQTCFGSTTSYILSSSMDKTIKLWN 532
           +L+       Q+  +E ++++ ++K    H D      +    S ++++S D  IK+W+
Sbjct: 316 WLAFGSSKLGQLLVYEWQSESYILKQ-QGHFDSTNSLAYSPDGSRVVTASEDGKIKVWD 373

 Score = 38.9 bits (89), Expect = 9e-07
 Identities = 32/161 (19%), Positives = 68/161 (42%), Gaps = 8/161 (4%)

Query: 376 NPSSFKHLAIHPDGMMFGIAAQDSNIHIYDIKSQEYKATLNGHTKSLNCLSFSENGYYLA 435
           N +  K +  HP   +  +        +YD+        L+     +N +S ++ G +LA
Sbjct: 259 NQAKVKCVTFHPATRLLAVGFTSGEFRLYDLPDFTLIQQLSMGQNPVNTVSVNQTGEWLA 318

Query: 436 -SSSKDNTVKLWDLRKAQSFQTITLNETPNFISFDYS---GKYLSIAVENDIQIYNFETK 491
             SSK   + +++  +++S+         +  S  YS    + ++ + +  I++++    
Sbjct: 319 FGSSKLGQLLVYEW-QSESYILKQQGHFDSTNSLAYSPDGSRVVTASEDGKIKVWDI--- 374

Query: 492 NQANLIKTLSSHTDIVTQTCFGSTTSYILSSSMDKTIKLWN 532
                + T   HT  VT   F      + SSS+D T++ W+
Sbjct: 375 TSGFCLATFEEHTSSVTAVQFAKRGQVMFSSSLDGTVRAWD 415

 Score = 36.2 bits (82), Expect = 6e-06
 Identities = 23/140 (16%), Positives = 57/140 (40%), Gaps = 6/140 (4%)

Query: 399 SNIHIYDIKSQEYKATLNGHTKSLNCLSFSENGYYLASSSKDNTVKLWDLRKAQSFQTIT 458
           + + ++D+ + +       H K++  +  ++ G  L S  +D    L + +         
Sbjct: 35  NRVSVFDLINNKSFTFEYEHRKNIAAIDLNKQGTLLISIDEDGRAILVNFKARNVLHHFN 94

Query: 459 LNETPNFISFDYSGKYLSIAVENDIQIYNFETKNQANLI------KTLSSHTDIVTQTCF 512
             E  + + F   G+  ++A    +QI+     N+          +  + H   +T   +
Sbjct: 95  FKEKCSAVKFSPDGRLFALASGRFLQIWKTPDVNKDRQFAPFVRHRVHAGHFQDITSLTW 154

Query: 513 GSTTSYILSSSMDKTIKLWN 532
              + +IL++S D + K+W+
Sbjct: 155 SQDSRFILTTSKDLSAKIWS 174

 Score = 33.5 bits (75), Expect = 4e-05
 Identities = 26/127 (20%), Positives = 61/127 (48%), Gaps = 15/127 (11%)

Query: 333 KHKDHVTSLALHPLENYFISSSKDSMWILHDLETAKTIK--TSKDNPSSFKHLAIHPDGM 390
           +H+ ++ ++ L+      IS  +D   IL + +    +     K+  S+ K     PDG 
Sbjct: 53  EHRKNIAAIDLNKQGTLLISIDEDGRAILVNFKARNVLHHFNFKEKCSAVK---FSPDGR 109

Query: 391 MFGIAAQDSNIHIYDI----KSQEYKATLN-----GHTKSLNCLSFSENGYYLASSSKDN 441
           +F +A+    + I+      K +++   +      GH + +  L++S++  ++ ++SKD 
Sbjct: 110 LFALAS-GRFLQIWKTPDVNKDRQFAPFVRHRVHAGHFQDITSLTWSQDSRFILTTSKDL 168

Query: 442 TVKLWDL 448
           + K+W +
Sbjct: 169 SAKIWSV 175

 Score = 26.9 bits (58), Expect = 0.003
 Identities = 46/224 (20%), Positives = 78/224 (34%), Gaps = 66/224 (29%)

Query: 236 NVYYVSLNDNKILSKLQGHLKKVNSIISHPSNFICITASNDKTIRIWKXXXXXXXXXXXX 295
           +++  S+   ++L  L GH   V+ +     N +  +AS DKTIRIW             
Sbjct: 454 DIHVWSVQTGQLLDALSGHEGPVSCLSFSQENSVLASASWDKTIRIWS------------ 501

Query: 296 XXXXXXXXXXXXXXXXXXXXXEYIYDNYQFVSAHVITKHKDHVTSLALHPLENYFISSSK 355
                                  I+   Q V    I  + D V +L++ P       S+ 
Sbjct: 502 -----------------------IFGRSQQVEP--IEVYSD-VLALSMRPDGKEVAVSTL 535

Query: 356 DSMWILHDLETAKTIK------------------TSKDNPSSFKHLAIHP--DGMMFGIA 395
                + ++E AK +                   T+K++  S     IH   DGM     
Sbjct: 536 KGQISIFNIEDAKQVGNIDCRKDIISGRFNQDRFTAKNSERSKFFTTIHYSFDGMAIVAG 595

Query: 396 AQDSNIHIYDIKSQ--------EYKATLNGHTKSLNCLSFSENG 431
             +++I +YD+ ++             LNG  + LN    +E G
Sbjct: 596 GNNNSICLYDVPNEVLLKRFIVSRNMALNGTLEFLNSKKMTEAG 639

 Score = 17.3 bits (33), Expect = 2.7
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 466 ISFDYSGKYLSIAVENDIQIYN 487
           I+F   GK L   V N + +++
Sbjct: 20  ITFSDDGKQLLSPVGNRVSVFD 41
Lambda     K      H
   0.316    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1112
Number of extensions: 61
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 13
Length of query: 532
Length of database: 923
Length adjustment: 39
Effective length of query: 493
Effective length of database: 884
Effective search space:   435812
Effective search space used:   435812
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 29 (16.1 bits)
S2: 29 (15.8 bits)