Query= PFC0365w Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) conserved
protein, putative
(532 letters)
>YCR057C PWP2 SGDID:S000000653, Chr III from 223224-220453, reverse
complement, Verified ORF, "Conserved 90S pre-ribosomal
component essential for proper endonucleolytic cleavage
of the 35 S rRNA precursor at A0, A1, and A2 sites;
contains eight WD-repeats; PWP2 deletion leads to
defects in cell cycle and bud morphogenesis"
Length = 923
Score = 92.0 bits (227), Expect = 9e-23
Identities = 62/219 (28%), Positives = 113/219 (51%), Gaps = 8/219 (3%)
Query: 319 IYDNYQFVSAHVITKHKDHVTSLALHPLENYF-ISSSKDSMWILHDLETAKTIKTSKDNP 377
+YD F ++ ++ V +++++ + SSK ++++ ++ I + +
Sbjct: 286 LYDLPDFTLIQQLSMGQNPVNTVSVNQTGEWLAFGSSKLGQLLVYEWQSESYILKQQGHF 345
Query: 378 SSFKHLAIHPDGMMFGIAAQDSNIHIYDIKSQEYKATLNGHTKSLNCLSFSENGYYLASS 437
S LA PDG A++D I ++DI S AT HT S+ + F++ G + SS
Sbjct: 346 DSTNSLAYSPDGSRVVTASEDGKIKVWDITSGFCLATFEEHTSSVTAVQFAKRGQVMFSS 405
Query: 438 SKDNTVKLWDLRKAQSFQTITLNETPNF--ISFDYSGKYLSI-AVEN-DIQIYNFETKNQ 493
S D TV+ WDL + ++F+T T E F ++ D SG+ + +++N DI +++ +T
Sbjct: 406 SLDGTVRAWDLIRYRNFRTFTGTERIQFNCLAVDPSGEVVCAGSLDNFDIHVWSVQT--- 462
Query: 494 ANLIKTLSSHTDIVTQTCFGSTTSYILSSSMDKTIKLWN 532
L+ LS H V+ F S + S+S DKTI++W+
Sbjct: 463 GQLLDALSGHEGPVSCLSFSQENSVLASASWDKTIRIWS 501
Score = 68.2 bits (165), Expect = 1e-15
Identities = 60/273 (21%), Positives = 103/273 (37%), Gaps = 42/273 (15%)
Query: 229 FSGGNDGNVYYVSLNDNKILSKLQGHLKKVNSIISHPSNFICITASNDKTIRIWKXXXXX 288
F G + + K QGH NS+ P +TAS D I++W
Sbjct: 319 FGSSKLGQLLVYEWQSESYILKQQGHFDSTNSLAYSPDGSRVVTASEDGKIKVW------ 372
Query: 289 XXXXXXXXXXXXXXXXXXXXXXXXXXXXEYIYDNYQFVSAHVITKHKDHVTSLALHPLEN 348
D +H VT++
Sbjct: 373 --------------------------------DITSGFCLATFEEHTSSVTAVQFAKRGQ 400
Query: 349 YFISSSKDSMWILHDLETAKTIKTSKDNPS-SFKHLAIHPDGMMFGIAAQDS-NIHIYDI 406
SSS D DL + +T F LA+ P G + + D+ +IH++ +
Sbjct: 401 VMFSSSLDGTVRAWDLIRYRNFRTFTGTERIQFNCLAVDPSGEVVCAGSLDNFDIHVWSV 460
Query: 407 KSQEYKATLNGHTKSLNCLSFSENGYYLASSSKDNTVKLWDL-RKAQSFQTITLNETPNF 465
++ + L+GH ++CLSFS+ LAS+S D T+++W + ++Q + I +
Sbjct: 461 QTGQLLDALSGHEGPVSCLSFSQENSVLASASWDKTIRIWSIFGRSQQVEPIEVYSDVLA 520
Query: 466 ISFDYSGKYLSIA-VENDIQIYNFETKNQANLI 497
+S GK ++++ ++ I I+N E Q I
Sbjct: 521 LSMRPDGKEVAVSTLKGQISIFNIEDAKQVGNI 553
Score = 42.4 bits (98), Expect = 8e-08
Identities = 47/239 (19%), Positives = 92/239 (38%), Gaps = 32/239 (13%)
Query: 325 FVSAHVITKHKDHVTSLALHPLENYFISSSKD---SMWILHDLE---TAKTIKTSKD--- 375
FV V H +TSL + +++SKD +W + E A T +D
Sbjct: 136 FVRHRVHAGHFQDITSLTWSQDSRFILTTSKDLSAKIWSVDSEEKNLAATTFNGHRDYVM 195
Query: 376 ----NPSSFKHLAIHPDGMMF-------------GIAAQDSNIHIYDIKSQEYKAT---- 414
+ K + DG +F + D DI ++ T
Sbjct: 196 GAFFSHDQEKIYTVSKDGAVFVWEFTKRPSDDDDNESEDDDKQEEVDISKYSWRITKKHF 255
Query: 415 LNGHTKSLNCLSFSENGYYLASSSKDNTVKLWDLRKAQSFQTITLNETP-NFISFDYSGK 473
+ + C++F LA +L+DL Q +++ + P N +S + +G+
Sbjct: 256 FYANQAKVKCVTFHPATRLLAVGFTSGEFRLYDLPDFTLIQQLSMGQNPVNTVSVNQTGE 315
Query: 474 YLSIAVENDIQIYNFETKNQANLIKTLSSHTDIVTQTCFGSTTSYILSSSMDKTIKLWN 532
+L+ Q+ +E ++++ ++K H D + S ++++S D IK+W+
Sbjct: 316 WLAFGSSKLGQLLVYEWQSESYILKQ-QGHFDSTNSLAYSPDGSRVVTASEDGKIKVWD 373
Score = 38.9 bits (89), Expect = 9e-07
Identities = 32/161 (19%), Positives = 68/161 (42%), Gaps = 8/161 (4%)
Query: 376 NPSSFKHLAIHPDGMMFGIAAQDSNIHIYDIKSQEYKATLNGHTKSLNCLSFSENGYYLA 435
N + K + HP + + +YD+ L+ +N +S ++ G +LA
Sbjct: 259 NQAKVKCVTFHPATRLLAVGFTSGEFRLYDLPDFTLIQQLSMGQNPVNTVSVNQTGEWLA 318
Query: 436 -SSSKDNTVKLWDLRKAQSFQTITLNETPNFISFDYS---GKYLSIAVENDIQIYNFETK 491
SSK + +++ +++S+ + S YS + ++ + + I++++
Sbjct: 319 FGSSKLGQLLVYEW-QSESYILKQQGHFDSTNSLAYSPDGSRVVTASEDGKIKVWDI--- 374
Query: 492 NQANLIKTLSSHTDIVTQTCFGSTTSYILSSSMDKTIKLWN 532
+ T HT VT F + SSS+D T++ W+
Sbjct: 375 TSGFCLATFEEHTSSVTAVQFAKRGQVMFSSSLDGTVRAWD 415
Score = 36.2 bits (82), Expect = 6e-06
Identities = 23/140 (16%), Positives = 57/140 (40%), Gaps = 6/140 (4%)
Query: 399 SNIHIYDIKSQEYKATLNGHTKSLNCLSFSENGYYLASSSKDNTVKLWDLRKAQSFQTIT 458
+ + ++D+ + + H K++ + ++ G L S +D L + +
Sbjct: 35 NRVSVFDLINNKSFTFEYEHRKNIAAIDLNKQGTLLISIDEDGRAILVNFKARNVLHHFN 94
Query: 459 LNETPNFISFDYSGKYLSIAVENDIQIYNFETKNQANLI------KTLSSHTDIVTQTCF 512
E + + F G+ ++A +QI+ N+ + + H +T +
Sbjct: 95 FKEKCSAVKFSPDGRLFALASGRFLQIWKTPDVNKDRQFAPFVRHRVHAGHFQDITSLTW 154
Query: 513 GSTTSYILSSSMDKTIKLWN 532
+ +IL++S D + K+W+
Sbjct: 155 SQDSRFILTTSKDLSAKIWS 174
Score = 33.5 bits (75), Expect = 4e-05
Identities = 26/127 (20%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 333 KHKDHVTSLALHPLENYFISSSKDSMWILHDLETAKTIK--TSKDNPSSFKHLAIHPDGM 390
+H+ ++ ++ L+ IS +D IL + + + K+ S+ K PDG
Sbjct: 53 EHRKNIAAIDLNKQGTLLISIDEDGRAILVNFKARNVLHHFNFKEKCSAVK---FSPDGR 109
Query: 391 MFGIAAQDSNIHIYDI----KSQEYKATLN-----GHTKSLNCLSFSENGYYLASSSKDN 441
+F +A+ + I+ K +++ + GH + + L++S++ ++ ++SKD
Sbjct: 110 LFALAS-GRFLQIWKTPDVNKDRQFAPFVRHRVHAGHFQDITSLTWSQDSRFILTTSKDL 168
Query: 442 TVKLWDL 448
+ K+W +
Sbjct: 169 SAKIWSV 175
Score = 26.9 bits (58), Expect = 0.003
Identities = 46/224 (20%), Positives = 78/224 (34%), Gaps = 66/224 (29%)
Query: 236 NVYYVSLNDNKILSKLQGHLKKVNSIISHPSNFICITASNDKTIRIWKXXXXXXXXXXXX 295
+++ S+ ++L L GH V+ + N + +AS DKTIRIW
Sbjct: 454 DIHVWSVQTGQLLDALSGHEGPVSCLSFSQENSVLASASWDKTIRIWS------------ 501
Query: 296 XXXXXXXXXXXXXXXXXXXXXEYIYDNYQFVSAHVITKHKDHVTSLALHPLENYFISSSK 355
I+ Q V I + D V +L++ P S+
Sbjct: 502 -----------------------IFGRSQQVEP--IEVYSD-VLALSMRPDGKEVAVSTL 535
Query: 356 DSMWILHDLETAKTIK------------------TSKDNPSSFKHLAIHP--DGMMFGIA 395
+ ++E AK + T+K++ S IH DGM
Sbjct: 536 KGQISIFNIEDAKQVGNIDCRKDIISGRFNQDRFTAKNSERSKFFTTIHYSFDGMAIVAG 595
Query: 396 AQDSNIHIYDIKSQ--------EYKATLNGHTKSLNCLSFSENG 431
+++I +YD+ ++ LNG + LN +E G
Sbjct: 596 GNNNSICLYDVPNEVLLKRFIVSRNMALNGTLEFLNSKKMTEAG 639
Score = 17.3 bits (33), Expect = 2.7
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 466 ISFDYSGKYLSIAVENDIQIYN 487
I+F GK L V N + +++
Sbjct: 20 ITFSDDGKQLLSPVGNRVSVFD 41
Lambda K H
0.316 0.132 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1112
Number of extensions: 61
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 13
Length of query: 532
Length of database: 923
Length adjustment: 39
Effective length of query: 493
Effective length of database: 884
Effective search space: 435812
Effective search space used: 435812
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 29 (16.1 bits)
S2: 29 (15.8 bits)