>YDR025W RPS11A SGDID:S000002432, Chr IV from
           491511-491555,491895-492320, Verified ORF, "Protein
           component of the small (40S) ribosomal subunit;
           identical to Rps11Bp and has similarity to E. coli S17
           and rat S11 ribosomal proteins"
          Length = 156

 Score =  185 bits (470), Expect = 3e-52
 Identities = 98/161 (60%), Positives = 112/161 (69%), Gaps = 5/161 (3%)

Query: 1   MATTLDVQHERAYQKQEGASFFNXXXXXXXXXXYIRYWKKVGLGFATPKEAKEGVYVDKK 60
           M+T L VQ ERA+QKQ     FN            R++K  GLGF TPK A EG Y+DKK
Sbjct: 1   MSTELTVQSERAFQKQP--HIFNNPKVKTSKRTK-RWYKNAGLGFKTPKTAIEGSYIDKK 57

Query: 61  CPFTGNVSIRGRILKGMVISNKMKRTIIIRRNYLHYVKKYNRFEKRHKNIPCHCSPCFDV 120
           CPFTG VSIRG+IL G V+S KM RTI+IRR YLHY+ KYNR+EKRHKN+P H SP F V
Sbjct: 58  CPFTGLVSIRGKILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRV 117

Query: 121 KEGDIVTVGQCRPLSKTVRFNVLHVEKHQIFGSARKQFVLF 161
           + GDIVTVGQCRP+SKTVRFNV+ V      G A KQF  F
Sbjct: 118 QVGDIVTVGQCRPISKTVRFNVVKVS--AAAGKANKQFAKF 156

Lambda     K      H
   0.326    0.140    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 108
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 156
Length adjustment: 17
Effective length of query: 144
Effective length of database: 139
Effective search space:    20016
Effective search space used:    20016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 17 (10.8 bits)
S2: 17 (11.2 bits)