Query= PFC1020c Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) 40S ribosomal
protein S3A, putative
(262 letters)
>YML063W RPS1B SGDID:S000004528, Chr XIII from 146482-147249,
Verified ORF, "Ribosomal protein 10 (rp10) of the small
(40S) subunit; nearly identical to Rps1Ap and has
similarity to rat S3a ribosomal protein"
Length = 255
Score = 213 bits (542), Expect = 3e-60
Identities = 111/222 (50%), Positives = 146/222 (65%), Gaps = 1/222 (0%)
Query: 28 EWYDLKAPKMFLVRNFGKTLVTKTIGKKLATDSLKGRIYEVNLADLNNDEDQAHKKIKLS 87
EW+D+KAP F RN GKTLV K+ G K A+D+LKGR+ EV LADL ED + +K+KL
Sbjct: 28 EWFDIKAPSTFENRNVGKTLVNKSTGLKNASDALKGRVVEVCLADLQGSEDHSFRKVKLR 87
Query: 88 CDHIINRDCYTDFCGLSITRDKLCSLIRKGYTLIEGHTDVKTLDNYHLRMFCIAFTKKRQ 147
D + ++ T+F G+ T DKL S++RK TLIE + VKT D+Y LR+F IAFT+K+
Sbjct: 88 VDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQA 147
Query: 148 NQTKSTCYAQTSQIKKIRKKMVDIMTAEASKVLLKDLVKKFIPESIGKEIEKQCKKIYPL 207
NQ K YAQ+S I+ IRK + +I+T E L L K IPE I KEIE K I+PL
Sbjct: 148 NQVKRHSYAQSSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPL 207
Query: 208 QNVLIRKVKILKRPKLDISKLMELHTDPK-EESGKNVNALPE 248
QN+ +RKVK+LK+PK D+ LM LH + EE GK V+ +
Sbjct: 208 QNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVSGFKD 249
Score = 16.2 bits (30), Expect = 0.75
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 162 KKIRKKMVDIMT 173
K ++KK+VD T
Sbjct: 14 KGLKKKVVDPFT 25
Lambda K H
0.319 0.134 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 199
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 262
Length of database: 255
Length adjustment: 24
Effective length of query: 238
Effective length of database: 231
Effective search space: 54978
Effective search space used: 54978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 21 (12.6 bits)
S2: 21 (12.7 bits)