Query= PFD0150w Pf Annotation|Plasmodium_falciparum_Sanger|(protein coding) hypothetical protein (560 letters)
>YKR092C SRP40 SGDID:S000001800, Chr XI from 613527-612307, reverse
           complement, Verified ORF, "Nucleolar, serine-rich
           protein with a role in preribosome assembly or
           transport; may function as a chaperone of small
           nucleolar ribonucleoprotein particles (snoRNPs);
           immunologically and structurally to rat Nopp140"
          Length = 406

 Score = 39.7 bits (91), Expect = 2e-07
 Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 474 NSASNEHVSYESDTYENNKNDKEINSQSDKKLNSQSDKKLNSQSDKKLNSQSDKEINSQN 533
           + +S+   S  S++   +++D + +S S    +S+SD + +SQS    +S S  + +S +
Sbjct: 154 SESSSSGSSSSSESESGSESDSDSSSSSSSSSDSESDSESDSQSS---SSSSSSDSSSDS 210

Query: 534 DKEVNSQSDKEINSQSDKGINSQSDND 560
           D   +  S    +S S    +S SD+D
Sbjct: 211 DSSSSDSSSDSDSSSSSSSSSSDSDSD 237

 Score = 39.7 bits (91), Expect = 2e-07
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 475 SASNEHVSYESDTYENNKNDKEINSQSDKK-----LNSQSDKKLNSQSDKKLNSQSDKEI 529
           S S+   S  S +  ++++D E +SQS         +S SD   +  S    +S S    
Sbjct: 171 SESDSDSSSSSSSSSDSESDSESDSQSSSSSSSSDSSSDSDSSSSDSSSDSDSSSSSSSS 230

Query: 530 NSQNDKEVNSQSDKEINSQSDKGINSQSDND 560
           +S +D + +S SD + +  SD   +S S +D
Sbjct: 231 SSDSDSDSDSSSDSDSSGSSDSSSSSDSSSD 261

 Score = 38.5 bits (88), Expect = 5e-07
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 475 SASNEHVSYESDTYENNKNDKEINSQSDKKLNSQSDKK-LNSQSDKKLNSQSDKEINSQN 533
           S S      +S +  ++ +D E +S+SD + +S S     +S SD   +  S    +S +
Sbjct: 167 SESGSESDSDSSSSSSSSSDSESDSESDSQSSSSSSSSDSSSDSDSSSSDSSSDSDSSSS 226

Query: 534 DKEVNSQSDKEINSQSDKGINSQSDN 559
               +S SD + +S SD   +  SD+
Sbjct: 227 SSSSSSDSDSDSDSSSDSDSSGSSDS 252

 Score = 37.7 bits (86), Expect = 9e-07
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 9/95 (9%)

Query: 474 NSASNEHVSYESDTYE---------NNKNDKEINSQSDKKLNSQSDKKLNSQSDKKLNSQ 524
           +S+S++  S ES++ +         +N++ KE      +  +S S +  +S S     S+
Sbjct: 109 SSSSSDESSSESESEDETKKRARESDNEDAKETKKAKTEPESSSSSESSSSGSSSSSESE 168

Query: 525 SDKEINSQNDKEVNSQSDKEINSQSDKGINSQSDN 559
           S  E +S +    +S SD E +S+SD   +S S +
Sbjct: 169 SGSESDSDSSSSSSSSSDSESDSESDSQSSSSSSS 203

 Score = 37.4 bits (85), Expect = 1e-06
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 484 ESDTYENNKNDKEINSQSDKKLNSQSDKK-LNSQSDKKLNSQSDKEINSQNDKEVNSQSD 542
           ESD  E+ K  K+  ++ +   +S+S     +S S+ +  S+SD + +S +    +S+SD
Sbjct: 132 ESDN-EDAKETKKAKTEPESSSSSESSSSGSSSSSESESGSESDSDSSSSSSSSSDSESD 190

Query: 543 KEINSQ---SDKGINSQSDND 560
            E +SQ   S    +S SD+D
Sbjct: 191 SESDSQSSSSSSSSDSSSDSD 211

 Score = 34.3 bits (77), Expect = 9e-06
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 474 NSASNEHVSYESDTYENNKNDKEINSQSDKKLNSQSDKKLNSQSDKKLNSQSDKEINSQN 533
           +S+S+   S  S +  ++ + +  +S S    +S SD   +S S+   +S S    +S +
Sbjct: 30  SSSSSSSSSSSSSSSSSSSSGESSSSSSSSSSSSSSDSSDSSDSESSSSSSSSSSSSSSS 89

Query: 534 -DKEVNSQSDKEINSQSDKGINSQSDN 559
            D E +S+SD   +  S    +S  ++
Sbjct: 90  SDSESSSESDSSSSGSSSSSSSSSDES 116

 Score = 33.1 bits (74), Expect = 2e-05
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)

Query: 473 LNSASNEHVSYESDTYENNKNDKEINSQSDKKLNSQSDKKLNSQSDKKLNSQSDKEINSQ 532
           +   S+   S  S +  ++ +    +S S +  +S S    +S SD   +S S+   +S 
Sbjct: 21  IEEKSSSSSSSSSSSSSSSSSSSSSSSSSGESSSSSSSSSSSSSSDSSDSSDSESSSSSS 80

Query: 533 NDKEVNSQS-DKEINSQSDKGINSQSDN 559
           +    +S S D E +S+SD   +  S +
Sbjct: 81  SSSSSSSSSSDSESSSESDSSSSGSSSS 108

 Score = 33.1 bits (74), Expect = 2e-05
 Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 471 DNLNSASNEHVSYESDTYENNKNDKEINSQSDKKLNSQSDKKLNSQSDKKLNSQSDKEIN 530
           D+ +S+S+     +SD+  ++ +D   +S S    +S SD+  +S S    +S SD +  
Sbjct: 222 DSSSSSSSSSSDSDSDSDSSSDSDSSGSSDSSSSSDSSSDESTSSDSS---DSDSDSDSG 278

Query: 531 SQNDKEVNSQSDKEINSQSDKGINSQS 557
           S ++ E    +  E  ++     +++S
Sbjct: 279 SSSELETKEATADESKAEETPASSNES 305

 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 18/89 (20%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 471 DNLNSASNEHVSYESDTYENNKNDKEINSQSDKKLNSQSDKKLNSQSDKKLNSQSDKEIN 530
           D+ +S S+   S  S +  ++ +D E +S+SD   +  S    +S  +    S+S+ E  
Sbjct: 69  DSSDSESSSSSSSSSSS-SSSSSDSESSSESDSSSSGSSSSSSSSSDESSSESESEDETK 127

Query: 531 SQNDKEVNSQSDKEINSQSDKGINSQSDN 559
            +  +  N  + +   ++++   +S S++
Sbjct: 128 KRARESDNEDAKETKKAKTEPESSSSSES 156

 Score = 28.1 bits (61), Expect = 7e-04
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 474 NSASNEHVSYESDTYENNKNDKEINSQSDKKLNSQSDKKLNSQSDKKLNSQSDKEINSQN 533
           +S S+   S +SD+  ++ +    +S SD+  +S S    +S SD    S S+ E     
Sbjct: 233 DSDSDSDSSSDSDSSGSSDSSSSSDSSSDESTSSDSS---DSDSDSDSGSSSELETKEAT 289

Query: 534 DKEVNSQSDKEINSQSDKGINSQS 557
             E  ++     +++S    +S S
Sbjct: 290 ADESKAEETPASSNESTPSASSSS 313

 Score = 18.9 bits (37), Expect = 0.41
 Identities = 7/29 (24%), Positives = 21/29 (72%)

Query: 211 DTSNESYTNSDTYDNTVTSTNIETNMESE 239
           ++ + S ++SD+  ++ +S++ E++ ES+
Sbjct: 166 ESESGSESDSDSSSSSSSSSDSESDSESD 194

 Score = 18.1 bits (35), Expect = 0.70
 Identities = 7/28 (25%), Positives = 19/28 (67%)

Query: 212 TSNESYTNSDTYDNTVTSTNIETNMESE 239
           + +ES + SD+  ++ +S++ ++  +SE
Sbjct: 165 SESESGSESDSDSSSSSSSSSDSESDSE 192

 Score = 17.7 bits (34), Expect = 0.92
 Identities = 6/15 (40%), Positives = 12/15 (80%)

Query: 211 DTSNESYTNSDTYDN 225
           D+S++  T+SD+ D+
Sbjct: 257 DSSSDESTSSDSSDS 271

 Score = 16.2 bits (30), Expect = 2.7
 Identities = 6/28 (21%), Positives = 17/28 (60%)

Query: 211 DTSNESYTNSDTYDNTVTSTNIETNMES 238
           D+S+ S ++SD+  ++ + +   ++  S
Sbjct: 176 DSSSSSSSSSDSESDSESDSQSSSSSSS 203
Lambda     K      H
   0.301    0.119    0.315 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 518
Number of extensions: 27
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 15
Length of query: 560
Length of database: 406
Length adjustment: 33
Effective length of query: 527
Effective length of database: 373
Effective search space:   196571
Effective search space used:   196571
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 26 (14.3 bits)
S2: 26 (14.6 bits)