Query= PFD0150w Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) hypothetical
protein
(560 letters)
>YKR092C SRP40 SGDID:S000001800, Chr XI from 613527-612307, reverse
complement, Verified ORF, "Nucleolar, serine-rich
protein with a role in preribosome assembly or
transport; may function as a chaperone of small
nucleolar ribonucleoprotein particles (snoRNPs);
immunologically and structurally to rat Nopp140"
Length = 406
Score = 39.7 bits (91), Expect = 2e-07
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 474 NSASNEHVSYESDTYENNKNDKEINSQSDKKLNSQSDKKLNSQSDKKLNSQSDKEINSQN 533
+ +S+ S S++ +++D + +S S +S+SD + +SQS +S S + +S +
Sbjct: 154 SESSSSGSSSSSESESGSESDSDSSSSSSSSSDSESDSESDSQSS---SSSSSSDSSSDS 210
Query: 534 DKEVNSQSDKEINSQSDKGINSQSDND 560
D + S +S S +S SD+D
Sbjct: 211 DSSSSDSSSDSDSSSSSSSSSSDSDSD 237
Score = 39.7 bits (91), Expect = 2e-07
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 475 SASNEHVSYESDTYENNKNDKEINSQSDKK-----LNSQSDKKLNSQSDKKLNSQSDKEI 529
S S+ S S + ++++D E +SQS +S SD + S +S S
Sbjct: 171 SESDSDSSSSSSSSSDSESDSESDSQSSSSSSSSDSSSDSDSSSSDSSSDSDSSSSSSSS 230
Query: 530 NSQNDKEVNSQSDKEINSQSDKGINSQSDND 560
+S +D + +S SD + + SD +S S +D
Sbjct: 231 SSDSDSDSDSSSDSDSSGSSDSSSSSDSSSD 261
Score = 38.5 bits (88), Expect = 5e-07
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 475 SASNEHVSYESDTYENNKNDKEINSQSDKKLNSQSDKK-LNSQSDKKLNSQSDKEINSQN 533
S S +S + ++ +D E +S+SD + +S S +S SD + S +S +
Sbjct: 167 SESGSESDSDSSSSSSSSSDSESDSESDSQSSSSSSSSDSSSDSDSSSSDSSSDSDSSSS 226
Query: 534 DKEVNSQSDKEINSQSDKGINSQSDN 559
+S SD + +S SD + SD+
Sbjct: 227 SSSSSSDSDSDSDSSSDSDSSGSSDS 252
Score = 37.7 bits (86), Expect = 9e-07
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 474 NSASNEHVSYESDTYE---------NNKNDKEINSQSDKKLNSQSDKKLNSQSDKKLNSQ 524
+S+S++ S ES++ + +N++ KE + +S S + +S S S+
Sbjct: 109 SSSSSDESSSESESEDETKKRARESDNEDAKETKKAKTEPESSSSSESSSSGSSSSSESE 168
Query: 525 SDKEINSQNDKEVNSQSDKEINSQSDKGINSQSDN 559
S E +S + +S SD E +S+SD +S S +
Sbjct: 169 SGSESDSDSSSSSSSSSDSESDSESDSQSSSSSSS 203
Score = 37.4 bits (85), Expect = 1e-06
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 484 ESDTYENNKNDKEINSQSDKKLNSQSDKK-LNSQSDKKLNSQSDKEINSQNDKEVNSQSD 542
ESD E+ K K+ ++ + +S+S +S S+ + S+SD + +S + +S+SD
Sbjct: 132 ESDN-EDAKETKKAKTEPESSSSSESSSSGSSSSSESESGSESDSDSSSSSSSSSDSESD 190
Query: 543 KEINSQ---SDKGINSQSDND 560
E +SQ S +S SD+D
Sbjct: 191 SESDSQSSSSSSSSDSSSDSD 211
Score = 34.3 bits (77), Expect = 9e-06
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 474 NSASNEHVSYESDTYENNKNDKEINSQSDKKLNSQSDKKLNSQSDKKLNSQSDKEINSQN 533
+S+S+ S S + ++ + + +S S +S SD +S S+ +S S +S +
Sbjct: 30 SSSSSSSSSSSSSSSSSSSSGESSSSSSSSSSSSSSDSSDSSDSESSSSSSSSSSSSSSS 89
Query: 534 -DKEVNSQSDKEINSQSDKGINSQSDN 559
D E +S+SD + S +S ++
Sbjct: 90 SDSESSSESDSSSSGSSSSSSSSSDES 116
Score = 33.1 bits (74), Expect = 2e-05
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 473 LNSASNEHVSYESDTYENNKNDKEINSQSDKKLNSQSDKKLNSQSDKKLNSQSDKEINSQ 532
+ S+ S S + ++ + +S S + +S S +S SD +S S+ +S
Sbjct: 21 IEEKSSSSSSSSSSSSSSSSSSSSSSSSSGESSSSSSSSSSSSSSDSSDSSDSESSSSSS 80
Query: 533 NDKEVNSQS-DKEINSQSDKGINSQSDN 559
+ +S S D E +S+SD + S +
Sbjct: 81 SSSSSSSSSSDSESSSESDSSSSGSSSS 108
Score = 33.1 bits (74), Expect = 2e-05
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 471 DNLNSASNEHVSYESDTYENNKNDKEINSQSDKKLNSQSDKKLNSQSDKKLNSQSDKEIN 530
D+ +S+S+ +SD+ ++ +D +S S +S SD+ +S S +S SD +
Sbjct: 222 DSSSSSSSSSSDSDSDSDSSSDSDSSGSSDSSSSSDSSSDESTSSDSS---DSDSDSDSG 278
Query: 531 SQNDKEVNSQSDKEINSQSDKGINSQS 557
S ++ E + E ++ +++S
Sbjct: 279 SSSELETKEATADESKAEETPASSNES 305
Score = 30.0 bits (66), Expect = 2e-04
Identities = 18/89 (20%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 471 DNLNSASNEHVSYESDTYENNKNDKEINSQSDKKLNSQSDKKLNSQSDKKLNSQSDKEIN 530
D+ +S S+ S S + ++ +D E +S+SD + S +S + S+S+ E
Sbjct: 69 DSSDSESSSSSSSSSSS-SSSSSDSESSSESDSSSSGSSSSSSSSSDESSSESESEDETK 127
Query: 531 SQNDKEVNSQSDKEINSQSDKGINSQSDN 559
+ + N + + ++++ +S S++
Sbjct: 128 KRARESDNEDAKETKKAKTEPESSSSSES 156
Score = 28.1 bits (61), Expect = 7e-04
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 474 NSASNEHVSYESDTYENNKNDKEINSQSDKKLNSQSDKKLNSQSDKKLNSQSDKEINSQN 533
+S S+ S +SD+ ++ + +S SD+ +S S +S SD S S+ E
Sbjct: 233 DSDSDSDSSSDSDSSGSSDSSSSSDSSSDESTSSDSS---DSDSDSDSGSSSELETKEAT 289
Query: 534 DKEVNSQSDKEINSQSDKGINSQS 557
E ++ +++S +S S
Sbjct: 290 ADESKAEETPASSNESTPSASSSS 313
Score = 18.9 bits (37), Expect = 0.41
Identities = 7/29 (24%), Positives = 21/29 (72%)
Query: 211 DTSNESYTNSDTYDNTVTSTNIETNMESE 239
++ + S ++SD+ ++ +S++ E++ ES+
Sbjct: 166 ESESGSESDSDSSSSSSSSSDSESDSESD 194
Score = 18.1 bits (35), Expect = 0.70
Identities = 7/28 (25%), Positives = 19/28 (67%)
Query: 212 TSNESYTNSDTYDNTVTSTNIETNMESE 239
+ +ES + SD+ ++ +S++ ++ +SE
Sbjct: 165 SESESGSESDSDSSSSSSSSSDSESDSE 192
Score = 17.7 bits (34), Expect = 0.92
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 211 DTSNESYTNSDTYDN 225
D+S++ T+SD+ D+
Sbjct: 257 DSSSDESTSSDSSDS 271
Score = 16.2 bits (30), Expect = 2.7
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 211 DTSNESYTNSDTYDNTVTSTNIETNMES 238
D+S+ S ++SD+ ++ + + ++ S
Sbjct: 176 DSSSSSSSSSDSESDSESDSQSSSSSSS 203
Lambda K H
0.301 0.119 0.315
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 518
Number of extensions: 27
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 15
Length of query: 560
Length of database: 406
Length adjustment: 33
Effective length of query: 527
Effective length of database: 373
Effective search space: 196571
Effective search space used: 196571
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 26 (14.3 bits)
S2: 26 (14.6 bits)