>YBR127C VMA2 SGDID:S000000331, Chr II from 492816-491263, reverse
           complement, Verified ORF, "Subunit B of the
           eight-subunit V1 peripheral membrane domain of the
           vacuolar H+-ATPase (V-ATPase), an electrogenic proton
           pump found throughout the endomembrane system; contains
           nucleotide binding sites; also detected in the
           cytoplasm"
          Length = 517

 Score =  694 bits (1791), Expect = 0.0
 Identities = 339/487 (69%), Positives = 405/487 (83%), Gaps = 1/487 (0%)

Query: 5   VVNTKAEASRVNALAAVRNYKVCPRLEYKTISGVQGPLVIIEDVKFPKYSEIVTIHLSDN 64
           +V +  E   +N  A  + + V PRL Y T+SGV GPLVI+E VKFP+Y+EIV + L D 
Sbjct: 1   MVLSDKELFAINKKAVEQGFNVKPRLNYNTVSGVNGPLVILEKVKFPRYNEIVNLTLPDG 60

Query: 65  TTRQGQILEVCGKKAVIQVFEGTSGIDNKNSYVEVSGDILKMPMSDEMLGRVFNGSGKPI 124
           T RQGQ+LE+ G +A++QVFEGTSGID K + VE +G+ L++P+S++MLGR+F+GSG+PI
Sbjct: 61  TVRQGQVLEIRGDRAIVQVFEGTSGIDVKKTTVEFTGESLRIPVSEDMLGRIFDGSGRPI 120

Query: 125 DKGPNILADDYLDINGNPINPQCRVYPKEMIQTGISTIDVMNSIVRGQKIPLFSAAGLPH 184
           D GP + A+DYLDING+PINP  R+YP+EMI TG+S ID MNSI RGQKIP+FSA+GLPH
Sbjct: 121 DNGPKVFAEDYLDINGSPINPYARIYPEEMISTGVSAIDTMNSIARGQKIPIFSASGLPH 180

Query: 185 NEIGAQICRQASLVQG-KDVLDHSDDNFAVVFGAMGVNMETARYFRQDFEENGKMERVCL 243
           NEI AQICRQA LV+  KDV D  ++NF++VF AMGVN+ETAR+F+QDFEENG +ER  L
Sbjct: 181 NEIAAQICRQAGLVRPTKDVHDGHEENFSIVFAAMGVNLETARFFKQDFEENGSLERTSL 240

Query: 244 FLNLANDPTIERILTPRIALTTAEYLAFEKEMHVFVILTDMSSYADALREVSSAREEVPG 303
           FLNLANDPTIERI+TPR+ALTTAEYLA++ E HV  ILTDMSSYADALREVS+AREEVPG
Sbjct: 241 FLNLANDPTIERIITPRLALTTAEYLAYQTERHVLTILTDMSSYADALREVSAAREEVPG 300

Query: 304 RRGYPGYMYSDLSTIYERAGRVEGRNGSITQFPILTMPNDDITHPIPDLTGYITEGQIFV 363
           RRGYPGYMY+DLSTIYERAGRVEGRNGSITQ PILTMPNDDITHPIPDLTGYITEGQIFV
Sbjct: 301 RRGYPGYMYTDLSTIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIFV 360

Query: 364 DRNLYNRQIYPPINVLPSLSRLMKSGIGHNMTRIDHPYVSDQLYSNYAIAQDVKAMKAVI 423
           DR L+N+ IYPPINVLPSLSRLMKS IG  MTR DH  VS+QLY+ YAI +D  AMKAV+
Sbjct: 361 DRQLHNKGIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYAKYAIGKDAAAMKAVV 420

Query: 424 GEEALSNDDILYLEFLDKFEKRFITQNTYECRDIYQSLDIAWELLRIFPEDMLKKIKTDI 483
           GEEALS +D L LEFL+KFEK FITQ  YE R +++SLD AW LLRI+P++ML +I   I
Sbjct: 421 GEEALSIEDKLSLEFLEKFEKTFITQGAYEDRTVFESLDQAWSLLRIYPKEMLNRISPKI 480

Query: 484 LSKYYPR 490
           L ++Y R
Sbjct: 481 LDEFYDR 487

Lambda     K      H
   0.319    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 834
Number of extensions: 23
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 517
Length adjustment: 34
Effective length of query: 460
Effective length of database: 483
Effective search space:   222180
Effective search space used:   222180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 26 (14.8 bits)
S2: 26 (14.6 bits)