Query= PFD0450c Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) pre-mrna
splicing factor, putative
(566 letters)
>YOR310C NOP58 SGDID:S000005837, Chr XV from 898357-896822, reverse
complement, Verified ORF, "Protein involved in pre-rRNA
processing, 18S rRNA synthesis, and snoRNA synthesis;
component of the small subunit processome complex, which
is required for processing of pre-18S rRNA"
Length = 511
Score = 86.7 bits (213), Expect = 2e-21
Identities = 61/229 (26%), Positives = 106/229 (46%), Gaps = 2/229 (0%)
Query: 184 DVMIEKCMETILKIDTEILNIHKYVKDIYSTKFPELDSIVYSPVEYISVVNKIRNEVDLK 243
DVMI + + + +D E+ K+ Y FPEL IV V Y ++ +
Sbjct: 160 DVMIIQAIALLDDLDKELNTYAMRCKEWYGWHFPELAKIVTDSVAYARIILTMGIRSKAS 219
Query: 244 NIDFSDILPNTTVMAITVASSMTTGICLPDNLLKNCISFCNEGIQLNEYRNIILLYLESK 303
D S+ILP + A+ ++ G + L N + + ++ YR + YL ++
Sbjct: 220 ETDLSEILPEEIEERVKTAAEVSMGTEITQTDLDNINALAEQIVEFAAYREQLSNYLSAR 279
Query: 304 MFYLAPNVTMLLGSSLTARLISAVGSLKNLSIISSQNLIVIASTKKSLFGLSNVHKTLGI 363
M +APN+T L+G + ARLI+ GSL +L+ + + ++ + K L H T
Sbjct: 280 MKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGAEKALFRALKTKHDTPKY 339
Query: 364 GILCCSEIVQSVPDAYKKKAISLLASKCSLAARIDYFKKYKE--GQYGL 410
G+L + +V K K +LA+K +++ R D + ++ G GL
Sbjct: 340 GLLYHASLVGQATGKNKGKIARVLAAKAAVSLRYDALAEDRDDSGDIGL 388
Lambda K H
0.320 0.136 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 413
Number of extensions: 16
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 511
Length adjustment: 35
Effective length of query: 531
Effective length of database: 476
Effective search space: 252756
Effective search space used: 252756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 27 (15.3 bits)
S2: 27 (15.0 bits)