>YLL011W SOF1 SGDID:S000003934, Chr XII from 127522-128991, Verified
           ORF, "Essential subunit of the U3 (box C+D) snRNP
           complex required for 2' O-methylation of pre-RNA; has
           similarity to the beta subunit of trimeric G-proteins
           and the splicing factor Prp4p"
          Length = 489

 Score =  301 bits (770), Expect = 4e-86
 Identities = 169/493 (34%), Positives = 272/493 (55%), Gaps = 45/493 (9%)

Query: 1   MEIKILHRNPEEYKNNKGTSNYKHVRSFDKKIHLFQREVEYKRALNATKMDKIFAKPLIK 60
           M+IK + R+ ++Y   K T   +  R+ + ++H F+R  EY +ALNATK++++FAKP + 
Sbjct: 1   MKIKTIKRSADDYVPVKSTQESQMPRNLNPELHPFERAREYTKALNATKLERMFAKPFVG 60

Query: 61  CLD-GHDDSIKSICVSNKNLSDLYSGSCNGIINMWNVLDKKLIKKIKAHDGFVRSLCMS- 118
            L  GH D + +I  +  +L+ L +GS +G+I  WN+  ++     KAH G V  LC++ 
Sbjct: 61  QLGYGHRDGVYAIAKNYGSLNKLATGSADGVIKYWNMSTREEFVSFKAHYGLVTGLCVTQ 120

Query: 119 ---YDEK-------FLFSCGDDKYIKQWVXXXXXXXXXXXXXXXXXXHQEQNDITQQSNN 168
              +D+K       F+ SC DDK +K W                             S N
Sbjct: 121 PRFHDKKPDLKSQNFMLSCSDDKTVKLW-----------------------------SIN 151

Query: 169 I--YEQKNDNQFHYLEKEDVPKKIYVCKNVPNSIDKHFSENLIVSGSQTLDIWDYYRNNA 226
           +  Y  KN +    +  E+   + +  ++    ID H   +   +G   + +WD  R   
Sbjct: 152 VDDYSNKNSSDNDSVTNEEGLIRTFDGESAFQGIDSHRENSTFATGGAKIHLWDVNRLKP 211

Query: 227 ISSFDYNNEYIYYVKCNYSQTNLVGLTLSDNSIGIVDIRNKTPIKKLYLKYRSNSLSWNN 286
           +S   +  + I  +K N ++T+++  T SDNSI + D+R  +P +K+    R+N++ WN 
Sbjct: 212 VSDLSWGADNITSLKFNQNETDILASTGSDNSIVLYDLRTNSPTQKIVQTMRTNAICWNP 271

Query: 287 MNPKQFVIANEDSNLYSFDMRYLKTAYLVHKGFVNAVLDVDFSPIGNKFVACSYDKTVRL 346
           M    FV ANED N Y +DMR L  +  V K  V+AV+DVDFSP G++ V  SYDK++R+
Sbjct: 272 MEAFNFVTANEDHNAYYYDMRNLSRSLNVFKDHVSAVMDVDFSPTGDEIVTGSYDKSIRI 331

Query: 347 FNSDEPTSYDVYHTKRMQHVLCCKFSQDAKYVFTGSSDMSLRIWKTISHEPSGILSNKEK 406
           + ++   S ++YHTKRMQHV   K+S D+KY+ +GS D ++R+W++ + E S + + +EK
Sbjct: 332 YKTNHGHSREIYHTKRMQHVFQVKYSMDSKYIISGSDDGNVRLWRSKAWERSNVKTTREK 391

Query: 407 QAINYRNKLKEKFASLKEIKRIRQHHHVPALIKSLSDKKKVMLEAKKRKEKNKIQHSKNP 466
             + Y  KLKE+F  + EIKRI +H HVP +IK   + K + L + KR+E N+ +  K+ 
Sbjct: 392 NKLEYDEKLKERFRHMPEIKRISRHRHVPQVIKKAQEIKNIELSSIKRREANERRTRKDM 451

Query: 467 EQLPIPEKKKIFV 479
               I E+KK  V
Sbjct: 452 PY--ISERKKQIV 462

Lambda     K      H
   0.317    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 726
Number of extensions: 47
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 482
Length of database: 489
Length adjustment: 34
Effective length of query: 448
Effective length of database: 455
Effective search space:   203840
Effective search space used:   203840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 26 (14.8 bits)
S2: 26 (14.6 bits)