>FBgn0010173 type=protein;
            loc=3R:complement(4088084..4088395,4088475..4089693,
            4089751..4089995,4090057..4090092); ID=FBpp0081356;
            name=RpA-70-PA; parent=FBgn0010173,FBtr0081867;
            dbxref=FlyBase:FBpp0081356,
            FlyBase_Annotation_IDs:CG9633-PA,GB_protein:AAF54206.1,
            GB_protein:AAF54206;
            MD5=4425d39514b971d001063620ad1e6d81; release=r5.1;
            species=Dmel; length=603;
          Length = 603

 Score =  164 bits (414), Expect = 3e-44
 Identities = 132/498 (26%), Positives = 219/498 (43%), Gaps = 43/498 (8%)

Query: 647  IMKKDEKILKDKTLNRNNRKITPYQSNAVIKMNDGILMQINKLSQYSSKWIIKARVQSKD 706
            +    + I K +  + NN  I    S     +N G+   I+ LS Y +KW+IKARV SK 
Sbjct: 135  VTSNSKPIAKKEPSHNNNNNIVMNSS-----INSGMTHPISSLSPYQNKWVIKARVTSKS 189

Query: 707  NIRRYTSGSKEGKVFNIELCDEDGEIKANFFGKAVDKWFDFIEVGKIYKISKGMIKVANK 766
             IR +++   EGK+F+++L DE GEI+A  F +  DK++D I+V  +Y ISK  +K ANK
Sbjct: 190  GIRTWSNARGEGKLFSMDLMDESGEIRATAFKEQCDKFYDLIQVDSVYYISKCQLKPANK 249

Query: 767  KFNTLNHDYEIT-XXXXXXXXXXXXXXXXXPKYNYNFISIDNIKNMNTGSFVDIIAVVLN 825
            ++++LN+ YE+T                  P+  YN + I ++  M   + VD I +   
Sbjct: 250  QYSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNLVPISDVSGMENKAAVDTIGICKE 309

Query: 826  YQEKMQIFVKKTGQYKDKRDVTLIDESFDTIQVTLWEKNATIIDEMNLRDNCIVCFKYLK 885
              E      + T +   KRD+TL+D S   I +TLW  +A   D        ++  K  +
Sbjct: 310  VGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWGDDAVNFDG---HVQPVILVKGTR 366

Query: 886  IGEWQ-GKKLESHARTKIEINPDNIEKAYILKNWWIH--NKKMXXXXXXXXXXXXXXETQ 942
            I E+  GK L     + ++INPD I +A+ L+ W+ +     +                 
Sbjct: 367  INEFNGGKSLSLGGGSIMKINPD-IPEAHKLRGWFDNGGGDSVANMVSARTGGGSFSTEW 425

Query: 943  KTIQEIKKNVNLVNEEALSGKGIMFTTYGFIDQIYNNMPVYSACP--DCNKKMISNSVDD 1000
             T+++ +   NL + +    K   F     +  +      Y ACP  DCNKK++    D 
Sbjct: 426  MTLKDARAR-NLGSGD----KPDYFQCKAVVHIVKQENAFYRACPQSDCNKKVVDEGNDQ 480

Query: 1001 NEYEPSSNLLEETMYCAKCNKNNIPVYNY--YINLKITDSTDSIRASAFANCAKIIMNGL 1058
                           C KCN    P + Y   IN+ I D T +   S+F    + ++   
Sbjct: 481  -------------FRCEKCNA-LFPNFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLGHT 526

Query: 1059 SAEEYMKLRQEYIMQENIENFDIIEKIKLNEFFFRIKVYMTSHMDELKKNYTIIDIAPVG 1118
            S E    L  +    E      I   +      F+++     + D  +   T+  +AP+ 
Sbjct: 527  SQEVGEALENDPAKAE-----QIFSALNFTSHIFKLRCKNEVYGDMTRNKLTVQSVAPIN 581

Query: 1119 KLLIDNCRYLIKSIKNLT 1136
                +  ++L+K ++ LT
Sbjct: 582  HK--EYNKHLLKELQELT 597

 Score = 16.9 bits (32), Expect = 4.9
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 701 RVQSKDNIRRYTSGSKEGKVFN 722
           ++ S  +  RY     +GK FN
Sbjct: 32  KINSAADSERYRILISDGKYFN 53

 Score = 16.5 bits (31), Expect = 6.5
 Identities = 6/12 (50%), Positives = 8/12 (66%)

Query: 335 GKFVYKENPNIP 346
           G  + K NP+IP
Sbjct: 380 GGSIMKINPDIP 391

 Score = 16.5 bits (31), Expect = 6.5
 Identities = 7/29 (24%), Positives = 12/29 (41%)

Query: 357 KNNLHKPFPVQKSASAYKGPSEYSEYNRN 385
           KN ++      K       P  + EYN++
Sbjct: 560 KNEVYGDMTRNKLTVQSVAPINHKEYNKH 588

 Score = 16.5 bits (31), Expect = 6.5
 Identities = 3/13 (23%), Positives = 12/13 (92%)

Query: 284 VHNRQNSEHIMKE 296
           +++++ ++H++KE
Sbjct: 580 INHKEYNKHLLKE 592

Lambda     K      H
   0.314    0.132    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1412
Number of extensions: 91
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 1145
Length of database: 603
Length adjustment: 42
Effective length of query: 1103
Effective length of database: 561
Effective search space:   618783
Effective search space used:   618783
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 30 (16.5 bits)
S2: 30 (16.2 bits)