>YAR007C RFA1 SGDID:S000000065, Chr I from 158621-156756, reverse
            complement, Verified ORF, "Subunit of heterotrimeric
            Replication Factor A (RF-A), which is a highly conserved
            single-stranded DNA binding protein involved in DNA
            replication, repair, and recombination"
          Length = 621

 Score =  173 bits (439), Expect = 3e-47
 Identities = 129/526 (24%), Positives = 237/526 (45%), Gaps = 54/526 (10%)

Query: 616  EDCHLKIRKDDMGSNQESRDYNYYDENSMDNIMKKD-------------------EKILK 656
            +D  L   + DM +   +   NY+ E+  + +  +D                   + +  
Sbjct: 101  DDFELVQSRADMVNQTSTFLDNYFSEHPNETLKDEDITDSGNVANQTNASNAGVPDMLHS 160

Query: 657  DKTLNRNNRKITPYQSNAVIKMNDGILMQINKLSQYSSKWIIKARVQSKDNIRRYTSGSK 716
            +  LN N RK      N+        +  I +LS Y + W IKARV  K  I+ + +   
Sbjct: 161  NSNLNANERKFANENPNS---QKTRPIFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRG 217

Query: 717  EGKVFNIELCDEDGEIKANFFGKAVDKWFDFIEVGKIYKISKGMIKVANKKFNTLNHDYE 776
            +GK+FN+   D  GEI+A  F     K+ + ++ GK+Y +SK  ++ A  +F  L H YE
Sbjct: 218  DGKLFNVNFLDTSGEIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYE 277

Query: 777  ITXXXXXXXXXXXXXXXXXPKYNYNFISIDNIKNMNTGSFVDIIAVVLNYQEKMQIFVKK 836
            +                  PK ++NFI +D I+N    S VD++ ++       ++   +
Sbjct: 278  LN-LDRDTVIEECFDESNVPKTHFNFIKLDAIQNQEVNSNVDVLGIIQTINPHFEL-TSR 335

Query: 837  TGQYKDKRDVTLIDESFDTIQVTLWEKNATIIDEMNLRDNCIVCFKYLKIGEWQGKKLES 896
             G+  D+RD+T++D+S  +I V LW + A    + NL +  +   K +++ ++ GK L  
Sbjct: 336  AGKKFDRRDITIVDDSGFSISVGLWNQQAL---DFNLPEGSVAAIKGVRVTDFGGKSLSM 392

Query: 897  HARTKIEINPDNIEKAYILKNWWIHNKKMXXXXXXXXXXXXXXETQKTIQE-IKKNVNLV 955
               + +  NP+ I +AY LK W+    +               ++  ++ + I + + + 
Sbjct: 393  GFSSTLIPNPE-IPEAYALKGWYDSKGRNANFITLKQEPGMGGQSAASLTKFIAQRITIA 451

Query: 956  NEEA----LSGKGIMFTTYGFIDQIYNNMPVYSAC--PDCNKKMISNSVDDNEYEPSSNL 1009
              +A     S KG  F+    I  +  +   Y AC   +CNKK++               
Sbjct: 452  RAQAENLGRSEKGDFFSVKAAISFLKVDNFAYPACSNENCNKKVLEQP------------ 499

Query: 1010 LEETMYCAKCNKNNI-PVYNYYINLKITDSTDSIRASAFANCAKIIMNGLSAEEYMKLRQ 1068
             + T  C KC+ NN  P + Y + + I D T+ +  + F + AK ++ G+ A   M L++
Sbjct: 500  -DGTWRCEKCDTNNARPNWRYILTISIIDETNQLWLTLFDDQAKQLL-GVDANTLMSLKE 557

Query: 1069 EYIMQENIENFDIIEKIKLNEFFFRIKVYMTSHMDELKKNYTIIDI 1114
            E    +  E   I + I++NE+ FRI+    ++ D+ +  YT+ ++
Sbjct: 558  E----DPNEFTKITQSIQMNEYDFRIRAREDTYNDQSRIRYTVANL 599

 Score = 20.0 bits (40), Expect = 0.60
 Identities = 12/64 (18%), Positives = 25/64 (39%)

Query: 341 ENPNIPNYTNVNDYESKNNLHKPFPVQKSASAYKGPSEYSEYNRNNMCYENNSPGNEAYN 400
           ++ N+ N TN ++    + LH    +  +   +   +  S+  R     E  SP    + 
Sbjct: 139 DSGNVANQTNASNAGVPDMLHSNSNLNANERKFANENPNSQKTRPIFAIEQLSPYQNVWT 198

Query: 401 KNSR 404
             +R
Sbjct: 199 IKAR 202

 Score = 17.7 bits (34), Expect = 3.0
 Identities = 6/20 (30%), Positives = 12/20 (60%)

Query: 610 YTYTNNEDCHLKIRKDDMGS 629
           Y   +NE+C+ K+ +   G+
Sbjct: 483 YPACSNENCNKKVLEQPDGT 502

 Score = 16.9 bits (32), Expect = 5.1
 Identities = 8/24 (33%), Positives = 9/24 (37%)

Query: 283 NVHNRQNSEHIMKENNNKNFTTPI 306
           N +   N      EN N   T PI
Sbjct: 161 NSNLNANERKFANENPNSQKTRPI 184

Lambda     K      H
   0.314    0.132    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1567
Number of extensions: 104
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 4
Length of query: 1145
Length of database: 621
Length adjustment: 42
Effective length of query: 1103
Effective length of database: 579
Effective search space:   638637
Effective search space used:   638637
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 30 (16.5 bits)
S2: 30 (16.2 bits)