>5 exonuclease complex with Rrp41p, Rrp42p, Rrp43p and Dis3p">YHR069C RRP4 SGDID:S000001111, Chr VIII from 234660-233581, reverse
           complement, Verified ORF, "Protein involved in rRNA
           processing; component of the exosome 3->5 exonuclease
           complex with Rrp41p, Rrp42p, Rrp43p and Dis3p"
          Length = 359

 Score =  136 bits (343), Expect = 7e-37
 Identities = 73/196 (37%), Positives = 113/196 (57%), Gaps = 5/196 (2%)

Query: 50  KLVLPGECVLDKNDKDRFLKGGGLYEEDDMFYACILGRVNYINKLIYVEPLKGKYTGSVG 109
           ++V PGE V    D   +++G G Y  D+M Y+ + G V+ +N+L+ V PLKG+Y    G
Sbjct: 53  QIVTPGELV---TDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRYAPETG 109

Query: 110 DLLVGKIKDISNDKWIVEIGSYCRAYLSISQTNISIFSQRIRLYNDVINMIHIYKPDDII 169
           D +VG+I ++ N +W V+IG    A L +   N+     R +  +D + M    K  D++
Sbjct: 110 DHVVGRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLL 169

Query: 170 ACEIQRISTDGTIILHTRSSIYGKLSNGVLIIVPQTLIHNQKKHIFVFPCNVQIILGMNG 229
             E+Q +  DG+  LHTRS  YGKL NG+   VP +LI   K H    P N+ ++LG+NG
Sbjct: 170 NAEVQSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPGNITVVLGVNG 229

Query: 230 YIWI--SSPIKKSKDT 243
           YIW+  +S +  ++DT
Sbjct: 230 YIWLRKTSQMDLARDT 245

 Score = 16.9 bits (32), Expect = 0.81
 Identities = 6/12 (50%), Positives = 8/12 (66%)

Query: 15  CEIGEITNKIIS 26
           CEIG    +I+S
Sbjct: 310 CEIGITQQRIVS 321

 Score = 15.0 bits (27), Expect = 3.1
 Identities = 6/23 (26%), Positives = 13/23 (56%)

Query: 238 KKSKDTNPNSVDQNIEENKFEDV 260
           + S + + N+   + +EN  ED+
Sbjct: 15  QNSSNLSYNNTGISDDENDEEDI 37

Lambda     K      H
   0.319    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 296
Number of extensions: 17
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 338
Length of database: 359
Length adjustment: 29
Effective length of query: 309
Effective length of database: 330
Effective search space:   101970
Effective search space used:   101970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 23 (13.4 bits)
S2: 23 (13.5 bits)