>YDR394W RPT3 SGDID:S000002802, Chr IV from 1261672-1262958,
           Verified ORF, "One of six ATPases of the 19S regulatory
           particle of the 26S proteasome involved in the
           degradation of ubiquitinated substrates; substrate of
           N-acetyltransferase B"
          Length = 428

 Score =  503 bits (1295), Expect = e-147
 Identities = 252/382 (65%), Positives = 315/382 (82%), Gaps = 3/382 (0%)

Query: 12  DYYIRLKNLKKQIDILNIQEDYIKEEHKNLKRELIRSKNEIKRIQSVPLIIGQFLDIIDN 71
           D Y +LK L+K+ ++L +QEDYIK+E ++LKREL R++ E+KRIQSVPL+IGQFL+ ID 
Sbjct: 46  DIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQ 105

Query: 72  NYGIVSSTAGSNYYVRILSTLNKEDLKPSVSVALHRHSHSIVNILPSESDSSIQLLQITE 131
           N GIVSST G +Y VRILSTL++E LKPS+SVALHRHS+++V+ILP +SDSSI ++   E
Sbjct: 106 NTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENE 165

Query: 132 RPNVKYTDLGGLDMQKQEMKEAVELPLTCPELYEKIGIEPPMGILIYGPPGTGKTMLVKA 191
           +P+V Y D+GGLDMQKQE++EAVELPL   +LYE+IGI+PP G+L+YGPPGTGKTMLVKA
Sbjct: 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKA 225

Query: 192 VANETQVTFIGVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIIFIDEVDAIATKRFDAQ 251
           VAN T+  FI V GSEFV KYLGEGPRMVRDVFRLAREN+PSIIFIDEVD+IATKRFDAQ
Sbjct: 226 VANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ 285

Query: 252 TGADREVQRILLELLNQMDGFDKSTNVKVIMATNRADTLDPALLRPGRLDRKIEFP-LPD 310
           TG+DREVQRIL+ELL QMDGFD+STNVKVIMATNRADTLDPALLRPGRLDRKIEFP L D
Sbjct: 286 TGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRD 345

Query: 311 RKQKRLIFQTIISKMNVSSDVNIESFVVRTDKXXXXXXXXXXXXXGMQAIRKNRYIITAN 370
           R+++RLIF TI SKM+++ + +++S ++R D              G++A+RKNRY+I  +
Sbjct: 346 RRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQS 405

Query: 371 DFEQGYRTHVR--KQLRDYEFY 390
           D E+ Y T V+    +  ++FY
Sbjct: 406 DLEEAYATQVKTDNTVDKFDFY 427

 Score = 13.9 bits (24), Expect = 9.7
 Identities = 4/6 (66%), Positives = 6/6 (100%)

Query: 326 NVSSDV 331
           NV+SD+
Sbjct: 42  NVNSDI 47

Lambda     K      H
   0.318    0.137    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 502
Number of extensions: 16
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 2
Length of query: 392
Length of database: 428
Length adjustment: 31
Effective length of query: 361
Effective length of database: 397
Effective search space:   143317
Effective search space used:   143317
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 24 (13.9 bits)
S2: 24 (13.9 bits)