Query= PFD0975w Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) ROI
kinase-like protein
(581 letters)
>YNL207W RIO2 SGDID:S000005151, Chr XIV from 255354-256631, Verified
ORF, "Essential serine kinase involved in the processing
of the 20S pre-rRNA into mature 18S rRNA; has similarity
to Rio1p"
Length = 425
Score = 243 bits (621), Expect = 9e-69
Identities = 155/424 (36%), Positives = 234/424 (55%), Gaps = 38/424 (8%)
Query: 1 MKLDISCFSFLSRNEYRVLTAIEMGMRNHEYLSVSLISSIANLRKE-GIVSVXXXXXXXX 59
MKLD S +L+ +++RVL A+E G R+HE + LI I+ +R + G
Sbjct: 1 MKLDTSHMRYLTTDDFRVLQAVEQGSRSHEVVPTPLIHQISGMRSQSGTNRAISDLAKLS 60
Query: 60 XISH-QNKKYDGYKLTYLGYDFLALRTFLKRGILKSIGNQIGVGKESDIYICKDVDDNLL 118
IS +N KYDGY+LTY G D+LAL+T L R + S+GN IGVGKESDIY D + N
Sbjct: 61 LISKMRNVKYDGYRLTYNGIDYLALKTMLNRDTVYSVGNTIGVGKESDIYKVSDKNGNPR 120
Query: 119 CLKIHRLGRISFRTIKNNRDYYGK-KCFRNWLYLSRIAATKEYAYLKVLYENNFPVPKPH 177
+KIHRLGR SF +++NNRDY K NW++LSR+AA KEY ++ +LY F VP+P
Sbjct: 121 VMKIHRLGRTSFHSVRNNRDYLKKSNQGANWMHLSRLAANKEYQFMSMLYSKGFKVPEPF 180
Query: 178 DINRHMIIMSYIKGYPLSHV-KLNNPYKIIDTLFNILVKFAKADIIHGDYNEFNILVDD- 235
D +RH+++M I+GYP+ + K N K+ L +V A + +IH D+NEFNI++ D
Sbjct: 181 DNSRHIVVMELIEGYPMRRLRKHKNIPKLYSDLMCFIVDLANSGLIHCDFNEFNIMIKDK 240
Query: 236 --DEN---VTIIDFPQIVSLRHVNAKMYFERDINCVINHFFKKYKIKIQEYPLYEDVVLL 290
DEN +IDFPQ +S++H +A YF+RD++C I FFKK K+K + P D +L
Sbjct: 241 LEDENDCGFVVIDFPQCISIQHQDADYYFQRDVDC-IRRFFKK-KLKYEPKP---DSSML 295
Query: 291 NKDKLNID--------ENDVTKQDDHLLLEVLQNDKLNYSSDATNNMDDA------PVHH 336
+ + + DV + D+ L E++Q + ++ A V++
Sbjct: 296 DTEGFGDGYKYAYPDFKRDVKRTDN--LDELVQASGFSKKHPGDRGLETAVESMRNAVYN 353
Query: 337 IDASLEKEETSEASNESTH-----MFELHMDNEKKHE--KDYITMDKEIINDTCDSKGDN 389
D + +E E + E + ++ +DNE + +D + E I + S +N
Sbjct: 354 SDDDMSNDEAEEENGEGDYSEEDEYYDSELDNESSEDDSEDAQEEENERIIEALSSGVEN 413
Query: 390 MYTD 393
+ D
Sbjct: 414 LKMD 417
Score = 16.9 bits (32), Expect = 1.7
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 370 DYITMDKEIINDTCDSKGDNMYTDYDKPGYK 400
DY+ + + DT S G+ + + YK
Sbjct: 81 DYLALKTMLNRDTVYSVGNTIGVGKESDIYK 111
Lambda K H
0.317 0.136 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 708
Number of extensions: 51
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 4
Length of query: 581
Length of database: 425
Length adjustment: 34
Effective length of query: 547
Effective length of database: 391
Effective search space: 213877
Effective search space used: 213877
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 26 (14.8 bits)
S2: 26 (14.6 bits)