Query= PFD1235w Pf Annotation|Plasmodium_falciparum_Sanger|(protein coding) erythrocyte membrane protein 1 (PfEMP1) (3553 letters)
>YGR245C SDA1 SGDID:S000003477, Chr VII from 982073-979770, reverse
            complement, Verified ORF, "Highly conserved nuclear
            protein required for actin cytoskeleton organization and
            passage through Start, plays a critical role in G1
            events, binds Nap1p, also involved in 60S ribosome
            biogenesis"
          Length = 767

 Score = 36.6 bits (83), Expect = 2e-05
 Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 15/145 (10%)

Query: 3379 DIYDEVLKRKE---NELFGTNYKKNTSNNSVAKNTNSDPIMNQL---DLLHKWLDRHRDI 3432
            D+  E+LK+K+   N        K    +S      +D  +  +   +LL KW   H + 
Sbjct: 491  DVAPEMLKKKDRGKNAAMEVQEAKKGGKDSKRPQFGADNSVQGIAGIELLAKWKKEHGEE 550

Query: 3433 CENWGKKEDILNKLNEQWNKDNDGGDIPNDNKKLNTDVSIQIDMDETKGKKEFSN---MD 3489
             EN    ED     N + + D++  D+  +   +++D    +DM+++  +K+ +     D
Sbjct: 551  SEN----EDA--DANWEVDVDSEEDDVDGEWVTMDSDKEYDVDMEDSDDEKDNAKGKESD 604

Query: 3490 TILDDMEDDIYYDVNDENPSVDDIP 3514
            + L+  +DD   +V DE    D  P
Sbjct: 605  SDLELSDDDDEKEVKDEQEDADIDP 629

 Score = 23.1 bits (48), Expect = 0.28
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 640 KTIYKN-----ENGNTNNYYKKLNNHFQGYFFHVMKELNKEEKW 678
           K IY N     ++ NTN   +KLN   Q   F+++ + + +  W
Sbjct: 178 KIIYTNLISLLKSCNTNGKNQKLNKSTQAVCFNLLDQPDSQGIW 221

 Score = 20.0 bits (40), Expect = 2.4
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 2858 YNRIQKKLKTCKENGKGSTCIRS 2880
            Y  +   LK+C  NGK     +S
Sbjct: 181  YTNLISLLKSCNTNGKNQKLNKS 203

 Score = 18.5 bits (36), Expect = 6.9
 Identities = 5/12 (41%), Positives = 9/12 (75%)

Query: 353 CTKTIRNKDILS 364
           C   +RNKD+++
Sbjct: 134 CLTMLRNKDVIT 145

 Score = 18.1 bits (35), Expect = 9.0
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 2993 SPAPVGDDDDPLEEENPVTQPNICPQTS 3020
            S   + DDDD  E ++     +I P+ +
Sbjct: 605  SDLELSDDDDEKEVKDEQEDADIDPEAA 632
Lambda     K      H
   0.314    0.132    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5957
Number of extensions: 320
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 5
Length of query: 3553
Length of database: 767
Length adjustment: 52
Effective length of query: 3501
Effective length of database: 715
Effective search space:  2503215
Effective search space used:  2503215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (18.8 bits)
S2: 35 (18.1 bits)