Query= PFD1235w Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) erythrocyte
membrane protein 1 (PfEMP1)
(3553 letters)
>YGR245C SDA1 SGDID:S000003477, Chr VII from 982073-979770, reverse
complement, Verified ORF, "Highly conserved nuclear
protein required for actin cytoskeleton organization and
passage through Start, plays a critical role in G1
events, binds Nap1p, also involved in 60S ribosome
biogenesis"
Length = 767
Score = 36.6 bits (83), Expect = 2e-05
Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 15/145 (10%)
Query: 3379 DIYDEVLKRKE---NELFGTNYKKNTSNNSVAKNTNSDPIMNQL---DLLHKWLDRHRDI 3432
D+ E+LK+K+ N K +S +D + + +LL KW H +
Sbjct: 491 DVAPEMLKKKDRGKNAAMEVQEAKKGGKDSKRPQFGADNSVQGIAGIELLAKWKKEHGEE 550
Query: 3433 CENWGKKEDILNKLNEQWNKDNDGGDIPNDNKKLNTDVSIQIDMDETKGKKEFSN---MD 3489
EN ED N + + D++ D+ + +++D +DM+++ +K+ + D
Sbjct: 551 SEN----EDA--DANWEVDVDSEEDDVDGEWVTMDSDKEYDVDMEDSDDEKDNAKGKESD 604
Query: 3490 TILDDMEDDIYYDVNDENPSVDDIP 3514
+ L+ +DD +V DE D P
Sbjct: 605 SDLELSDDDDEKEVKDEQEDADIDP 629
Score = 23.1 bits (48), Expect = 0.28
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 640 KTIYKN-----ENGNTNNYYKKLNNHFQGYFFHVMKELNKEEKW 678
K IY N ++ NTN +KLN Q F+++ + + + W
Sbjct: 178 KIIYTNLISLLKSCNTNGKNQKLNKSTQAVCFNLLDQPDSQGIW 221
Score = 20.0 bits (40), Expect = 2.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 2858 YNRIQKKLKTCKENGKGSTCIRS 2880
Y + LK+C NGK +S
Sbjct: 181 YTNLISLLKSCNTNGKNQKLNKS 203
Score = 18.5 bits (36), Expect = 6.9
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 353 CTKTIRNKDILS 364
C +RNKD+++
Sbjct: 134 CLTMLRNKDVIT 145
Score = 18.1 bits (35), Expect = 9.0
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 2993 SPAPVGDDDDPLEEENPVTQPNICPQTS 3020
S + DDDD E ++ +I P+ +
Sbjct: 605 SDLELSDDDDEKEVKDEQEDADIDPEAA 632
Lambda K H
0.314 0.132 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5957
Number of extensions: 320
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 5
Length of query: 3553
Length of database: 767
Length adjustment: 52
Effective length of query: 3501
Effective length of database: 715
Effective search space: 2503215
Effective search space used: 2503215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (18.8 bits)
S2: 35 (18.1 bits)