>YDR012W RPL4B SGDID:S000002419, Chr IV from 471850-472938, Verified
           ORF, "Protein component of the large (60S) ribosomal
           subunit, nearly identical to Rpl4Ap and has similarity
           to E. coli L4 and rat L4 ribosomal proteins"
          Length = 362

 Score =  350 bits (899), Expect = e-101
 Identities = 175/332 (52%), Positives = 232/332 (69%), Gaps = 3/332 (0%)

Query: 5   RPVANVYSTNGKNVVGEVEIPVVFQTPIRNDLIQSVYTNMSKNRRHPYAVKLGAGYETSA 64
           RP   V+S  G+     + +P VF  PIR D++ +V+T+++KN+R  YAV   AG++TSA
Sbjct: 3   RPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSA 62

Query: 65  ESWGTGRAVARIPRVPGGGTHRAGQGAFGNMCRGGGMFNPTKIWRRWGRKVNLKEKRYAV 124
           ESWGTGRAVARIPRV GGGT R+GQGAFGNMCRGG MF PTK WR+W  KVN  EKRYA 
Sbjct: 63  ESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYAT 122

Query: 125 CSSIAASGVTSLVLARGHRISHLKEVPLVVSNDIESLSKTKEAVNFLVSLGLKDEVNRLV 184
            S+IAA+ V SLVLARGHR+  + E+PLVVS D+ES+ KTKEAV  L ++G   ++ +++
Sbjct: 123 ASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVL 182

Query: 185 KSKKIRAGKGKMRNRKYKIRNGPLIIYENDNGVKKAFRNIPGVDLCKVTKLNLLKLAPGG 244
           KSKK+RAGKGK RNR++  R GPL++Y  DNG+ KA RN+PGV+   V  LNLL+LAPG 
Sbjct: 183 KSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIVKALRNVPGVETANVASLNLLQLAPGA 242

Query: 245 SIGRLCIWSESAFKKLDVIYGKIHEKKVTKKNYILPKSIVHNPDIYRIIHSDKVQASLLA 304
            +GR  IW+E+AF KLD ++G       +K  Y LP  I+   D+ RII+S ++Q+++  
Sbjct: 243 HLGRFVIWTEAAFTKLDQVWGS-ETVASSKVGYTLPSHIISTSDVTRIINSSEIQSAIRP 301

Query: 305 KKKPCKKR--LQNKNSLTNFAVRCRLNPAYKL 334
             +  +KR  +  KN L N  V  RLNP  K+
Sbjct: 302 AGQATQKRTHVLKKNPLKNKQVLLRLNPYAKV 333

Lambda     K      H
   0.318    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 436
Number of extensions: 17
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 362
Length adjustment: 30
Effective length of query: 381
Effective length of database: 332
Effective search space:   126492
Effective search space used:   126492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 24 (13.9 bits)
S2: 24 (13.9 bits)