Query= PFE0380c Pf Annotation|Plasmodium_falciparum_Sanger|(protein coding) hypothetical protein, conserved (531 letters)
>YBR170C NPL4 SGDID:S000000374, Chr II from 578081-576339, reverse
           complement, Verified ORF, "Endoplasmic reticulum and
           nuclear membrane protein, forms a complex with Cdc48p
           and Ufd1p that recognizes ubiquitinated proteins in the
           endoplasmic reticulum and delivers them to the
           proteasome for degradation"
          Length = 580

 Score =  103 bits (257), Expect = 2e-26
 Identities = 98/321 (30%), Positives = 149/321 (46%), Gaps = 47/321 (14%)

Query: 215 PLSITLKHQEYRHVDHLELMNVEEVRNFVNYWYTYNNMLEQRIGWMYGYYREDNHYNLGI 274
           P +ITL+ QE+R VDH+E    E +  F+  W  Y  M  QR G+MYG Y + ++  LGI
Sbjct: 221 PSAITLQQQEFRMVDHVEFQKSEIINEFIQAW-RYTGM--QRFGYMYGSYSKYDNTPLGI 277

Query: 275 RAVCECIYEPPQFCEDN----KIHLLEDDFLPTVDLIAERLGLERIGWIFTHL------- 323
           +AV E IYEPPQ  E +     +  ++++ L  +D  A+ +GL RIG IFT L       
Sbjct: 278 KAVVEAIYEPPQHDEQDGLTMDVEQVKNEML-QIDRQAQEMGLSRIGLIFTDLSDAGAGD 336

Query: 324 --------PRQEYLTSDEVVNIAKMQL--TNIKKNMHYTNYPISNFITCTISPDPLLSNE 373
                       +L+S EV+  A+ Q    N+ K      +  S F+TC IS +  L  E
Sbjct: 337 GSVFCKRHKDSFFLSSLEVIMAARHQTRHPNVSKYSE-QGFFSSKFVTCVISGN--LEGE 393

Query: 374 PVTNAFMVSDLGMALMRDNLIEENQIDPSHIQLRNPNKNELLPQIL-----ESG---KET 425
              +++ VS    AL+  ++I  +   PS   + +      +P+I      E G   KE 
Sbjct: 394 IDISSYQVSTEAEALVTADMISGSTF-PSMAYINDTTDERYVPEIFYMKSNEYGITVKEN 452

Query: 426 NK--FDTDWFIVRVNESAPKVVRSIFKNF----HFPRENRQ---HSQSAFHVKEYFRSNK 476
            K  F  D+ +V +    P         F     FP  NRQ    SQ    +K+Y  +  
Sbjct: 453 AKPAFPVDYLLVTLTHGFPNTDTETNSKFVSSTGFPWSNRQAMGQSQDYQELKKYLFNVA 512

Query: 477 LDRGTKGIHQ-CSDFHLILFV 496
                  +H+  S+FHL+L++
Sbjct: 513 SSGDFNLLHEKISNFHLLLYI 533

 Score = 18.9 bits (37), Expect = 0.57
 Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 108 YDKDVH-KNQMDSLCIQKKESIVNNNMNK 135
           +DK+ H KN++  +        +N N NK
Sbjct: 154 WDKEYHEKNKIKHISFHSYLKKLNENANK 182

 Score = 16.5 bits (31), Expect = 2.8
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 459 RQHSQSAFHVKEYFRSNKLDR 479
           RQH      +KE     +L++
Sbjct: 104 RQHRYGPLRIKELAVDEELEK 124

 Score = 15.8 bits (29), Expect = 4.8
 Identities = 5/9 (55%), Positives = 6/9 (66%)

Query: 469 KEYFRSNKL 477
           KEY   NK+
Sbjct: 156 KEYHEKNKI 164

 Score = 15.4 bits (28), Expect = 6.3
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 450 KNFHFPRENRQHSQSAFHVKEYFRSNKLDRGTKGIHQCSD 489
           K +H   + +  S  ++  K    +NK + G+  I   S+
Sbjct: 156 KEYHEKNKIKHISFHSYLKKLNENANKKENGSSYISPLSE 195
Lambda     K      H
   0.321    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 625
Number of extensions: 43
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 5
Length of query: 531
Length of database: 580
Length adjustment: 36
Effective length of query: 495
Effective length of database: 544
Effective search space:   269280
Effective search space used:   269280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 27 (15.3 bits)
S2: 27 (15.0 bits)