Query= PFE0380c Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) hypothetical
protein, conserved
(531 letters)
>YBR170C NPL4 SGDID:S000000374, Chr II from 578081-576339, reverse
complement, Verified ORF, "Endoplasmic reticulum and
nuclear membrane protein, forms a complex with Cdc48p
and Ufd1p that recognizes ubiquitinated proteins in the
endoplasmic reticulum and delivers them to the
proteasome for degradation"
Length = 580
Score = 103 bits (257), Expect = 2e-26
Identities = 98/321 (30%), Positives = 149/321 (46%), Gaps = 47/321 (14%)
Query: 215 PLSITLKHQEYRHVDHLELMNVEEVRNFVNYWYTYNNMLEQRIGWMYGYYREDNHYNLGI 274
P +ITL+ QE+R VDH+E E + F+ W Y M QR G+MYG Y + ++ LGI
Sbjct: 221 PSAITLQQQEFRMVDHVEFQKSEIINEFIQAW-RYTGM--QRFGYMYGSYSKYDNTPLGI 277
Query: 275 RAVCECIYEPPQFCEDN----KIHLLEDDFLPTVDLIAERLGLERIGWIFTHL------- 323
+AV E IYEPPQ E + + ++++ L +D A+ +GL RIG IFT L
Sbjct: 278 KAVVEAIYEPPQHDEQDGLTMDVEQVKNEML-QIDRQAQEMGLSRIGLIFTDLSDAGAGD 336
Query: 324 --------PRQEYLTSDEVVNIAKMQL--TNIKKNMHYTNYPISNFITCTISPDPLLSNE 373
+L+S EV+ A+ Q N+ K + S F+TC IS + L E
Sbjct: 337 GSVFCKRHKDSFFLSSLEVIMAARHQTRHPNVSKYSE-QGFFSSKFVTCVISGN--LEGE 393
Query: 374 PVTNAFMVSDLGMALMRDNLIEENQIDPSHIQLRNPNKNELLPQIL-----ESG---KET 425
+++ VS AL+ ++I + PS + + +P+I E G KE
Sbjct: 394 IDISSYQVSTEAEALVTADMISGSTF-PSMAYINDTTDERYVPEIFYMKSNEYGITVKEN 452
Query: 426 NK--FDTDWFIVRVNESAPKVVRSIFKNF----HFPRENRQ---HSQSAFHVKEYFRSNK 476
K F D+ +V + P F FP NRQ SQ +K+Y +
Sbjct: 453 AKPAFPVDYLLVTLTHGFPNTDTETNSKFVSSTGFPWSNRQAMGQSQDYQELKKYLFNVA 512
Query: 477 LDRGTKGIHQ-CSDFHLILFV 496
+H+ S+FHL+L++
Sbjct: 513 SSGDFNLLHEKISNFHLLLYI 533
Score = 18.9 bits (37), Expect = 0.57
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 108 YDKDVH-KNQMDSLCIQKKESIVNNNMNK 135
+DK+ H KN++ + +N N NK
Sbjct: 154 WDKEYHEKNKIKHISFHSYLKKLNENANK 182
Score = 16.5 bits (31), Expect = 2.8
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 459 RQHSQSAFHVKEYFRSNKLDR 479
RQH +KE +L++
Sbjct: 104 RQHRYGPLRIKELAVDEELEK 124
Score = 15.8 bits (29), Expect = 4.8
Identities = 5/9 (55%), Positives = 6/9 (66%)
Query: 469 KEYFRSNKL 477
KEY NK+
Sbjct: 156 KEYHEKNKI 164
Score = 15.4 bits (28), Expect = 6.3
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 450 KNFHFPRENRQHSQSAFHVKEYFRSNKLDRGTKGIHQCSD 489
K +H + + S ++ K +NK + G+ I S+
Sbjct: 156 KEYHEKNKIKHISFHSYLKKLNENANKKENGSSYISPLSE 195
Lambda K H
0.321 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 625
Number of extensions: 43
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 5
Length of query: 531
Length of database: 580
Length adjustment: 36
Effective length of query: 495
Effective length of database: 544
Effective search space: 269280
Effective search space used: 269280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 27 (15.3 bits)
S2: 27 (15.0 bits)