Query= PFE0660c Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) uridine
phosphorylase, putative
(245 letters)
>YDL229W SSB1 SGDID:S000002388, Chr IV from 44066-45907, Verified
ORF, "Cytoplasmic ATPase that is a ribosome-associated
molecular chaperone; may be involved in the folding of
newly-synthesized polypeptide chains; member of the heat
shock protein 70 (HSP70) family; interacts with the
phosphatase subunit Reg1p"
Length = 613
Score = 28.1 bits (61), Expect = 4e-04
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 1 MDNLLRHLKISKEQITPVVLVVGDPGRVDKIKVVCDSYVD 40
++ +L+ KISK QI VVL VG R+ K++ + + D
Sbjct: 320 VEQVLKDAKISKSQIDEVVL-VGGSTRIPKVQKLLSDFFD 358
Score = 18.5 bits (36), Expect = 0.34
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 216 DFDNNLVPH 224
DFD NL+ H
Sbjct: 235 DFDTNLLEH 243
Score = 15.0 bits (27), Expect = 3.8
Identities = 5/7 (71%), Positives = 5/7 (71%)
Query: 3 NLLRHLK 9
NLL H K
Sbjct: 239 NLLEHFK 245
Lambda K H
0.322 0.140 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 255
Number of extensions: 12
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 245
Length of database: 613
Length adjustment: 30
Effective length of query: 215
Effective length of database: 583
Effective search space: 125345
Effective search space used: 125345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 24 (14.0 bits)
S2: 24 (13.9 bits)