Query= PFE0845c Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) 60S ribosomal
subunit protein L8, putative
(260 letters)
>YIL018W RPL2B SGDID:S000001280, Chr IX from
316766-316769,317170-317930, Verified ORF, "Protein
component of the large (60S) ribosomal subunit,
identical to Rpl2Ap and has similarity to E. coli L2 and
rat L8 ribosomal proteins; expression is upregulated at
low temperatures"
Length = 254
Score = 330 bits (847), Expect = 1e-95
Identities = 158/253 (62%), Positives = 193/253 (76%)
Query: 1 MGRVIRGQRKGRGSIFKSHNHHRKGAAKLRHLDYCEKKGYIKGLVKDIIHDPGRGAPLAK 60
MGRVIR QRKG GSIF SH R+GAAKLR LDY E+ GYI+G+VK I+HD GRGAPLAK
Sbjct: 1 MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGIVKQIVHDSGRGAPLAK 60
Query: 61 VIFKRTEKYGKKEELIIASEGMFTGQYISCGTKAPLSVGNILPIGKMPEGTLICNLEHRT 120
V+F+ KY +EE+ IA+EG+ TGQ+I G KA L+VGN+LP+G +PEGT++ N+E +
Sbjct: 61 VVFRDPYKYRLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKP 120
Query: 121 GNRGTLVKASGCYATVVGQSEDGKKTKVRLPSGAKKTIDXXXXXXXXXXXXXXRIDKPIL 180
G+RG L +ASG Y ++G + D KT+VRLPSGAKK I R+DKP+L
Sbjct: 121 GDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLL 180
Query: 181 KAGVAHHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVSRSAPAGQKVGLIAA 240
KAG A HKYR+KRN WPK RGVAMNPV+HPHGGGNHQHIG ST+SR A +GQK GLIAA
Sbjct: 181 KAGRAFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLIAA 240
Query: 241 RRTGLLRGAKKTK 253
RRTGLLRG++KT+
Sbjct: 241 RRTGLLRGSQKTQ 253
Lambda K H
0.317 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 337
Number of extensions: 13
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 254
Length adjustment: 24
Effective length of query: 236
Effective length of database: 230
Effective search space: 54280
Effective search space used: 54280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 21 (12.5 bits)
S2: 21 (12.7 bits)