>YOR361C PRT1 SGDID:S000005888, Chr XV from 1017650-1015359, reverse
           complement, Verified ORF, "Subunit of the core complex
           of translation initiation factor 3(eIF3), essential for
           translation; part of a subcomplex (Prt1p-Rpg1p-Nip1p)
           that stimulates binding of mRNA and tRNA(i)Met to
           ribosomes"
          Length = 763

 Score =  212 bits (539), Expect = 6e-59
 Identities = 184/720 (25%), Positives = 318/720 (44%), Gaps = 110/720 (15%)

Query: 1   MVRVSDNELSDKELVDFLSEDSDNGDENLLNKKYSDKEALITLEVDFPKIVTILGIPKVE 60
           +++++     D +L D   +D D  D   L ++Y      +T E +F + + + G P + 
Sbjct: 37  IIQMTTETFEDIKLEDIPVDDIDFSD---LEEQYK-----VTEEFNFDQYIVVNGAPVIP 88

Query: 61  SEKHGRLAEVLKKLFIRHLSAKISDSSLLNMKIHMPTDEEN-KTKGICFVTFNDSFQANE 119
           S K   L + L  LF +          ++NM+   P DE   KTKG  FV       A +
Sbjct: 89  SAKVPVLKKALTSLFSKA-------GKVVNMEF--PIDEATGKTKGFLFVECGSMNDAKK 139

Query: 120 AVKILNKLKLDAKHILTTSKMDDIENIINRD------EKAMPINVVGFTREKIRWWLYDE 173
            +K  +  +LD KH L    M D+E   + D      E  MP  V       ++ WL D+
Sbjct: 140 IIKSFHGKRLDLKHRLFLYTMKDVERYNSDDFDTEFREPDMPTFVPS---SSLKSWLMDD 196

Query: 174 KCREQFIVRYDSHFEVHWFDPLEKEPQLIYTTFKKNAPFSSVQWSNQGSYLVSFHNPGIA 233
           K R+QF+++ D    V W     +E  L+ +  ++N   + V++S +G+YL S+H  G+ 
Sbjct: 197 KVRDQFVLQDDVKTSVFWNSMFNEEDSLVES--RENWSTNYVRFSPKGTYLFSYHQQGVT 254

Query: 234 LWGGDSFEKLIRLQHKSVKEIMFSPNENYVLTW-----------DGTPYSLRNE-KSICI 281
            WGG +F++L R  H  V+    SPNE Y++T+           + +P++ +NE   +CI
Sbjct: 255 AWGGPNFDRLRRFYHPDVRNSSVSPNEKYLVTFSTEPIIVEEDNEFSPFTKKNEGHQLCI 314

Query: 282 WRVITGKLLRSFITPEYSPKEKMFPHFLWSPDDKYIACIGKQKEVYVYELPSMLLIEDQE 341
           W + +G L+ +F  P        +P   WS +DKY A +          +   L++ D  
Sbjct: 315 WDIASGLLMATF--PVIKSPYLKWPLVRWSYNDKYCARM----------VGDSLIVHDAT 362

Query: 342 KKRTP-----LKYSGVKEFDWSP-------------VDNILAIWIPQTNDTPGTLILVDV 383
           K   P     LK SG+++F ++P                +LA W P+TN++  T  + +V
Sbjct: 363 KNFMPLEAKALKPSGIRDFSFAPEGVKLQPFRNGDEPSVLLAYWTPETNNSACTATIAEV 422

Query: 384 PSRKELVSRKIYDVSVASIHWHNKGDYLCLXXXXXXXXXXXXXXEYTQLEIFRMREKNIP 443
           P  + L +  +  VS  ++HW N+ ++LC               +++ L+I R+ E++IP
Sbjct: 423 PRGRVLKTVNLVQVSNVTLHWQNQAEFLCF---NVERHTKSGKTQFSNLQICRLTERDIP 479

Query: 444 VDNVQIEAVKTKQFHWEESNSNRFALILREETTN------KQQIRFYKISNK-GTARDAK 496
           V+ V+++     +F W E + NRF  I   E  +         IRFY    K  T    +
Sbjct: 480 VEKVELKD-SVFEFGW-EPHGNRFVTISVHEVADMNYAIPANTIRFYAPETKEKTDVIKR 537

Query: 497 WSSTFDINNQM-NFMKWSPQGTYFILASLAS----EGTLYFC--------CLNNNDEVDV 543
           WS   +I     N + WSP G + ++ +L         L F          +N+N++V  
Sbjct: 538 WSLVKEIPKTFANTVSWSPAGRFVVVGALVGPNMRRSDLQFYDMDYPGEKNINDNNDVSA 597

Query: 544 IHKD----EHLLVNSISWSRCGRFLVSAVSNNPNAFNTGYREENSEAGFHIWTFQGKCLM 599
             KD     +    +I+W   GR++ +  S+          +   E G+ I+   G  + 
Sbjct: 598 SLKDVAHPTYSAATNITWDPSGRYVTAWSSS---------LKHKVEHGYKIFNIAGNLVK 648

Query: 600 RIKKPSFIQFLFRPHPKSLFXXXXXXXXXXXXXXYSKKFDNIDE-KMKTAKKNALLTERK 658
                 F  F +RP P S+               +S +F+  D  +  TA ++ +L +R+
Sbjct: 649 EDIIAGFKNFAWRPRPASILSNAERKKVRKNLREWSAQFEEQDAMEADTAMRDLILHQRE 708

 Score = 16.9 bits (32), Expect = 3.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 696 EWEEKTIVIEHVLSVKE 712
           E +EKT VI+    VKE
Sbjct: 527 ETKEKTDVIKRWSLVKE 543

Lambda     K      H
   0.318    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1483
Number of extensions: 86
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 716
Length of database: 763
Length adjustment: 40
Effective length of query: 676
Effective length of database: 723
Effective search space:   488748
Effective search space used:   488748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 29 (16.2 bits)
S2: 29 (15.8 bits)