Query= PFE1005w Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) 40S ribosomal
subunit protein S9, putative
(189 letters)
>YPL081W RPS9A SGDID:S000006002, Chr XVI from
404947-404953,405455-406041, Verified ORF, "Protein
component of the small (40S) ribosomal subunit; nearly
identical to Rps9Ap and has similarity to E. coli S4 and
rat S9 ribosomal proteins"
Length = 197
Score = 248 bits (632), Expect = 6e-71
Identities = 122/176 (69%), Positives = 148/176 (84%)
Query: 1 MPKSYRNYSKTARNPKRPFEKERLDQELKLIGEYGLKNKREIWRVQYLLAKIRSAARYLL 60
MP++ R YSKT PKRP+E RLD ELKL GE+GLKNK+EI+R+ + L+KIR AAR LL
Sbjct: 1 MPRAPRTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLL 60
Query: 61 TLDEKSSKRIFQGEALLRRMVRQGLLGENEEKLDYVLGLTLPKLLERRLQTKVFKLGLAK 120
T DEK KR+F+G AL+RR+VR G+L E+++KLDYVL L + LERRLQT+V+KLGLAK
Sbjct: 61 TRDEKDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAK 120
Query: 121 SVHHARVLIRQRHIRVGKQMVDIPSFLVRVDSEKHIDFATTSPFGGARPGRVKRKS 176
SVHHARVLI QRHI VGKQ+V+IPSF+VR+DSEKHIDFA TSPFGGARPGRV R++
Sbjct: 121 SVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRN 176
Lambda K H
0.322 0.138 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 155
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 197
Length adjustment: 20
Effective length of query: 169
Effective length of database: 177
Effective search space: 29913
Effective search space used: 29913
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 19 (11.7 bits)
S2: 19 (11.9 bits)