>YLR418C CDC73 SGDID:S000004410, Chr XII from 958092-956911, reverse
           complement, Verified ORF, "Substituent of the Paf1
           complex together with RNA polymerase II, Paf1p, Hpr1p,
           Ctr9, Leo1, Rtf1 and Ccr4p, distinct from Srb-containing
           Pol II complexes; required for the expression of certain
           genes and modification of some histones"
          Length = 393

 Score = 48.9 bits (115), Expect = 6e-10
 Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 15/163 (9%)

Query: 802 IIDNTRKPIINKNNVKSFLLHNKLLTTNNDDILQNDKNKQNVFHSTSLIYKMFNK-SIKF 860
           +I +    I+   N+K FLL +K +         N +N  +V +    I K F + S   
Sbjct: 241 LIPSAASSILTVANIKQFLLESKYV---------NPRNLPSVPNGLVNIEKNFERISRPI 291

Query: 861 LFVEINHIKKFTQND-WKCVIAVILNSKESIKYIFKYYPYQITTTLFYPFKNFLFIYNDD 919
            F+ +++ + FT+ + W  V+A+         + F  Y +     LF   K + F +  D
Sbjct: 292 RFIIVDNTRMFTKPEYWDRVVAIFTTGHT---WQFNNYQWNSPQELFQRCKGYYFHFAGD 348

Query: 920 IIPHELLSQSNMEIIKLNRDHRNDDHLAVQKFWKKIEHFILQK 962
            +P  +  Q N+E ++L+++ R  D   V+ FW  +E  ++ +
Sbjct: 349 SVPQHV-QQWNVEKVELDKNKRFKDVEVVRYFWHSLEKELISR 390

 Score = 16.9 bits (32), Expect = 2.7
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 433 IKNIKNNNTNGQEKDIINDEYYFNDEYVDKNKLEVLLS-SFNENYVDINEIYKDNISPSL 491
           +  ++ +  NG +  + N+E    D+      +E L S    ++   +NE  +  I  SL
Sbjct: 5   LDRLREHLKNGDKLVLKNNEGQSTDDITKATMVETLSSDGSTQDSFPLNEETEIEIDGSL 64

Lambda     K      H
   0.319    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 810
Number of extensions: 41
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 974
Length of database: 393
Length adjustment: 37
Effective length of query: 937
Effective length of database: 356
Effective search space:   333572
Effective search space used:   333572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.8 bits)
S2: 28 (15.4 bits)