Query= PFE1085w Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) DEAD-box
subfamily ATP-dependant helicase, putative
(841 letters)
>YDL084W SUB2 SGDID:S000002242, Chr IV from 305237-306577, Verified
ORF, "Component of the TREX complex required for nuclear
mRNA export; DEAD-box RNA helicase involved in early and
late steps of spliceosome assembly; homolog of the human
splicing factor hUAP56"
Length = 446
Score = 67.4 bits (163), Expect = 2e-15
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 576 KLKKLVQIINVFNMQNGIIFCRTNLDCDNVYNFLNAVGDGKAYKGTVESLKENKYSCVIL 635
K +KL Q+++ IIF ++ + + LNA + + + +
Sbjct: 293 KNRKLAQLLDDLEFNQVIIFVKSTTRANELTKLLNA----------------SNFPAITV 336
Query: 636 KGKMSNDERKNNLQAFKKGEVRFLICTDVAARGIDIQNLRYLIIMTLSDNINTFFHKIGR 695
G M +ER +AFK E R + TDV RGIDI+ + I L++ + + H++GR
Sbjct: 337 HGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGR 396
Query: 696 VGRDGKNSLCIVLSADNEQEE 716
GR G L I + E EE
Sbjct: 397 AGRFGTKGLAISFVSSKEDEE 417
Score = 52.0 bits (123), Expect = 7e-11
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 6/141 (4%)
Query: 347 IVLCPTRDLAQQTYNNYLTYSECFNNPSINIGILVGGEQRNKGHHM--NDDGSYNIVVGT 404
+V+C R+LA Q N YL +S+ P + + GG +K + N D + +IVV T
Sbjct: 134 VVICNARELAYQIRNEYLRFSKYM--PDVKTAVFYGGTPISKDAELLKNKDTAPHIVVAT 191
Query: 405 CFKLIECIRKNSIKVNDIRLLILDEADELINNDEKTVLEIKDSCMKYGHRVQTLFFSATL 464
+L +R+ I ++ ++ ++DE D+++ + ++++ Q + FSATL
Sbjct: 192 PGRLKALVREKYIDLSHVKNFVIDECDKVLEELDMR-RDVQEIFRATPRDKQVMMFSATL 250
Query: 465 QDKNVKDCINKITNK-PIFVD 484
+ C + N IFVD
Sbjct: 251 SQEIRPICRRFLQNPLEIFVD 271
Score = 42.0 bits (97), Expect = 8e-08
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 2 SAFEELGLHSDLCAVLEKNGIDLPTAIQQESIPLTLGGGDLCACAETGTGKTLSFIFSSL 61
+ F++ L +L + G + P+ +QQ +IP ++ G D+ A++G GKT F+ S+L
Sbjct: 62 TGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL 121
Query: 62 Q 62
Q
Sbjct: 122 Q 122
Score = 20.4 bits (41), Expect = 0.24
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 215 NKNNNTISFKKNGKFLG 231
+ NNNT + K G ++G
Sbjct: 42 DNNNNTAAGDKKGSYVG 58
Score = 16.2 bits (30), Expect = 4.5
Identities = 5/7 (71%), Positives = 6/7 (85%)
Query: 516 ENDNNNH 522
E DNNN+
Sbjct: 40 EGDNNNN 46
Score = 15.8 bits (29), Expect = 5.8
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 710 ADNEQEEKV 718
+DNEQE ++
Sbjct: 13 SDNEQEIQI 21
Lambda K H
0.319 0.137 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 768
Number of extensions: 40
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 6
Length of query: 841
Length of database: 446
Length adjustment: 37
Effective length of query: 804
Effective length of database: 409
Effective search space: 328836
Effective search space used: 328836
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 27 (15.3 bits)
S2: 27 (15.0 bits)