Query= PFE1085w Pf Annotation|Plasmodium_falciparum_Sanger|(protein coding) DEAD-box subfamily ATP-dependant helicase, putative (841 letters)
>YDL084W SUB2 SGDID:S000002242, Chr IV from 305237-306577, Verified
           ORF, "Component of the TREX complex required for nuclear
           mRNA export; DEAD-box RNA helicase involved in early and
           late steps of spliceosome assembly; homolog of the human
           splicing factor hUAP56"
          Length = 446

 Score = 67.4 bits (163), Expect = 2e-15
 Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 16/141 (11%)

Query: 576 KLKKLVQIINVFNMQNGIIFCRTNLDCDNVYNFLNAVGDGKAYKGTVESLKENKYSCVIL 635
           K +KL Q+++       IIF ++    + +   LNA                + +  + +
Sbjct: 293 KNRKLAQLLDDLEFNQVIIFVKSTTRANELTKLLNA----------------SNFPAITV 336

Query: 636 KGKMSNDERKNNLQAFKKGEVRFLICTDVAARGIDIQNLRYLIIMTLSDNINTFFHKIGR 695
            G M  +ER    +AFK  E R  + TDV  RGIDI+ +   I   L++  + + H++GR
Sbjct: 337 HGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGR 396

Query: 696 VGRDGKNSLCIVLSADNEQEE 716
            GR G   L I   +  E EE
Sbjct: 397 AGRFGTKGLAISFVSSKEDEE 417

 Score = 52.0 bits (123), Expect = 7e-11
 Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 6/141 (4%)

Query: 347 IVLCPTRDLAQQTYNNYLTYSECFNNPSINIGILVGGEQRNKGHHM--NDDGSYNIVVGT 404
           +V+C  R+LA Q  N YL +S+    P +   +  GG   +K   +  N D + +IVV T
Sbjct: 134 VVICNARELAYQIRNEYLRFSKYM--PDVKTAVFYGGTPISKDAELLKNKDTAPHIVVAT 191

Query: 405 CFKLIECIRKNSIKVNDIRLLILDEADELINNDEKTVLEIKDSCMKYGHRVQTLFFSATL 464
             +L   +R+  I ++ ++  ++DE D+++   +    ++++         Q + FSATL
Sbjct: 192 PGRLKALVREKYIDLSHVKNFVIDECDKVLEELDMR-RDVQEIFRATPRDKQVMMFSATL 250

Query: 465 QDKNVKDCINKITNK-PIFVD 484
             +    C   + N   IFVD
Sbjct: 251 SQEIRPICRRFLQNPLEIFVD 271

 Score = 42.0 bits (97), Expect = 8e-08
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 2   SAFEELGLHSDLCAVLEKNGIDLPTAIQQESIPLTLGGGDLCACAETGTGKTLSFIFSSL 61
           + F++  L  +L   +   G + P+ +QQ +IP ++ G D+   A++G GKT  F+ S+L
Sbjct: 62  TGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL 121

Query: 62  Q 62
           Q
Sbjct: 122 Q 122

 Score = 20.4 bits (41), Expect = 0.24
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 215 NKNNNTISFKKNGKFLG 231
           + NNNT +  K G ++G
Sbjct: 42  DNNNNTAAGDKKGSYVG 58

 Score = 16.2 bits (30), Expect = 4.5
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 516 ENDNNNH 522
           E DNNN+
Sbjct: 40  EGDNNNN 46

 Score = 15.8 bits (29), Expect = 5.8
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 710 ADNEQEEKV 718
           +DNEQE ++
Sbjct: 13  SDNEQEIQI 21
Lambda     K      H
   0.319    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 768
Number of extensions: 40
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 6
Length of query: 841
Length of database: 446
Length adjustment: 37
Effective length of query: 804
Effective length of database: 409
Effective search space:   328836
Effective search space used:   328836
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 27 (15.3 bits)
S2: 27 (15.0 bits)