>YGL078C DBP3 SGDID:S000003046, Chr VII from 361862-360291, reverse
           complement, Verified ORF, "Putative ATP-dependent RNA
           helicase of the DEAD-box family involved in ribosomal
           biogenesis"
          Length = 523

 Score = 68.6 bits (166), Expect = 9e-16
 Identities = 33/91 (36%), Positives = 51/91 (56%)

Query: 624 SLKENKYSCVILKGKMSNDERKNNLQAFKKGEVRFLICTDVAARGIDIQNLRYLIIMTLS 683
           +LK N Y+   + G +S  +R   L  FK G+   L+ TDVAARG+DI N++ +I +T  
Sbjct: 378 NLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFP 437

Query: 684 DNINTFFHKIGRVGRDGKNSLCIVLSADNEQ 714
             +  + H+IGR GR G+      L  + E+
Sbjct: 438 LTVEDYVHRIGRTGRAGQTGTAHTLFTEQEK 468

 Score = 52.4 bits (124), Expect = 7e-11
 Identities = 37/143 (25%), Positives = 72/143 (50%), Gaps = 15/143 (10%)

Query: 347 IVLCPTRDLAQQTYNNYLTYSECFNNPSINIGILVGGEQRNKGHHMNDDGSYNIVVGTCF 406
           +V+ PTR+LA Q Y+N +  ++      +    + GG  +++           +VV T  
Sbjct: 186 LVISPTRELASQIYDNLIVLTD---KVGMQCCCVYGGVPKDEQRIQLKKSQ--VVVATPG 240

Query: 407 KLIECIRKNSIKVNDIRLLILDEADELI----NNDEKTVLEIKDSCMKYGHRVQTLFFSA 462
           +L++ +++ S+ ++ +  L+LDEAD ++      D K ++   D+  +     QTL F+A
Sbjct: 241 RLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKR-----QTLMFTA 295

Query: 463 TLQDKNVKDCINKITNKPIFVDL 485
           T   K V++  +   N PI V +
Sbjct: 296 T-WPKEVRELASTFMNNPIKVSI 317

 Score = 38.1 bits (87), Expect = 1e-06
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 3   AFEELGLHSDLCAVLEKNGIDLPTAIQQESIPLTLGGGDLCACAETGTGKTLSF 56
           +F+ L L S + A + K     PT IQ  + P  L G D+   AETG+GKT +F
Sbjct: 115 SFDYLSLDSSIQAEISK--FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAF 166

 Score = 17.7 bits (34), Expect = 1.8
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 11/54 (20%)

Query: 632 CVILKGKMSNDERKNNLQAFKKGEVRFLICT-----DVAARG-IDIQNLRYLII 679
           C  + G +  DE++  L   KK +V  ++ T     D+   G +D+  + YL++
Sbjct: 213 CCCVYGGVPKDEQRIQL---KKSQV--VVATPGRLLDLLQEGSVDLSQVNYLVL 261

 Score = 16.9 bits (32), Expect = 3.1
 Identities = 6/13 (46%), Positives = 7/13 (53%)

Query: 197 QEHYGEYFSNNDI 209
           Q    EYF  N+I
Sbjct: 88  QSDIDEYFKENEI 100

 Score = 16.5 bits (31), Expect = 4.1
 Identities = 8/32 (25%), Positives = 12/32 (37%)

Query: 764 VLDSKYYYAENVVDPLNYFKKHPVSNKSRRNK 795
           + D K    +  V      KKH    K ++ K
Sbjct: 6   IADKKRKVVDEEVIEKKKSKKHKKDKKDKKEK 37

 Score = 16.2 bits (30), Expect = 5.3
 Identities = 12/54 (22%), Positives = 19/54 (35%)

Query: 517 NDNNNHNKEIYNILYNEKLYHMNTRELYEYTDKVHIXXXXXXXXXXXDKEQISL 570
           ND      ++  I    +L       L   TDKV +           D+++I L
Sbjct: 176 NDQKKRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQL 229

Lambda     K      H
   0.319    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 934
Number of extensions: 50
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 841
Length of database: 523
Length adjustment: 38
Effective length of query: 803
Effective length of database: 485
Effective search space:   389455
Effective search space used:   389455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.8 bits)
S2: 28 (15.4 bits)