>YLR129W DIP2 SGDID:S000004119, Chr XII from 399658-402489, Verified
           ORF, "Nucleolar protein, specifically associated with
           the U3 snoRNA, part of the large ribonucleoprotein
           complex known as the small subunit (SSU) processome,
           required for 18S rRNA biogenesis, part of the active
           pre-rRNA processing complex"
          Length = 943

 Score = 39.7 bits (91), Expect = 3e-07
 Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 5/112 (4%)

Query: 17  IEFHPKVDMICAGSFDGNIILYXXXXXXXXXXXXHIIQNHDKAVKYVCFSKKGKEILAAS 76
           +E H   D++  G  DG I ++                 H  A+  + F   G  +++ S
Sbjct: 85  LEAHKDTDLLAVGYADGVIKVWDLMSKTVLLN----FNGHKAAITLLQFDGTGTRLISGS 140

Query: 77  SDNSCSITDISG-VCIWNNICHKNSISSILYSSNHTFITADEVGYVKHWDIR 127
            D++  + D+ G V ++    HK+SI+          I+  + G +K WD++
Sbjct: 141 KDSNIIVWDLVGEVGLYKLRSHKDSITGFWCQGEDWLISTSKDGMIKLWDLK 192

 Score = 32.0 bits (71), Expect = 6e-05
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 53  IQNHDKAVKYVCFSKKGKEILAASSDNSCSITDIS-GVCIWNNICHKNSISSILY-SSNH 110
           +  H   V  +  S   K I+ +S+D +  I  +  G C  +   H++SI ++ +   +H
Sbjct: 569 LYGHKLPVLSIDISFDSKMIITSSADKNIKIWGLDFGDCHKSLFAHQDSIMNVKFLPQSH 628

Query: 111 TFITADEVGYVKHWD 125
            F +  +   VK+WD
Sbjct: 629 NFFSCSKDAVVKYWD 643

 Score = 25.0 bits (53), Expect = 0.008
 Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 14/105 (13%)

Query: 197 NSKIVTTTLNGNISIFSKNPWGYMEGKIKASKDAISTFVKFDDYHIFFGTSDGFIKTAQI 256
           +S I+   L G + ++          K+++ KD+I+ F    +  +   + DG IK   +
Sbjct: 142 DSNIIVWDLVGEVGLY----------KLRSHKDSITGFWCQGEDWLISTSKDGMIKLWDL 191

Query: 257 KPSKLGETFSKHNNKESIEKLSINKNKNLLAQISNDYSINFYQIE 301
           K  +  ET   H      E   +    +LL     D  +  ++++
Sbjct: 192 KTHQCIETHIAHTG----ECWGLAVKDDLLITTGTDSQVKIWKLD 232

 Score = 23.9 bits (50), Expect = 0.017
 Identities = 37/220 (16%), Positives = 87/220 (39%), Gaps = 23/220 (10%)

Query: 98  KNSISSILYSSNHTFITADEVGYVKHWDIRDNTKKPIHKMKCFNDNITSMLMDHDEKSII 157
           +  + SI  S ++  +     G +K W+I+  T K I   +C    +T   +      I+
Sbjct: 391 RTDVRSIDISDDNKLLATASNGSLKIWNIK--THKCIRTFEC-GYALTCKFLPGGLLVIL 447

Query: 158 ITCGGQLGFFDILYKKNITSNNISNEYNDEFLCSNLMVHNSKIVTTTLNGNISIF----- 212
            T  G+L  FD+     +  + I + ++      +L     ++VT + +  +  +     
Sbjct: 448 GTRNGELQLFDLASSSLL--DTIEDAHDAAIWSLDLTSDGKRLVTGSADKTVKFWDFKVE 505

Query: 213 ------SKNPW-----GYMEGKIKASKDAISTFVKFDDYHIFFGTSDGFIKTAQIKPSKL 261
                 +KN +      + +  ++ + D +   V  DD ++     D  +K   +   K 
Sbjct: 506 NSLVPGTKNKFLPVLKLHHDTTLELTDDILCVRVSPDDRYLAISLLDNTVKVFFLDSMKF 565

Query: 262 GETFSKHNNKESIEKLSINKNKNLLAQISNDYSINFYQIE 301
               S + +K  +  + I+ +  ++   S D +I  + ++
Sbjct: 566 --YLSLYGHKLPVLSIDISFDSKMIITSSADKNIKIWGLD 603

 Score = 22.3 bits (46), Expect = 0.049
 Identities = 51/252 (20%), Positives = 93/252 (36%), Gaps = 53/252 (21%)

Query: 75  ASSDNSCSITDISGVCIWNNICHKNSISSILYSSNHTFITADEVGYVKHWDIR-DNTKKP 133
           ASS    +I D     IW         S  L S     +T      VK WD + +N+  P
Sbjct: 460 ASSSLLDTIEDAHDAAIW---------SLDLTSDGKRLVTGSADKTVKFWDFKVENSLVP 510

Query: 134 IHKMKC-------------FNDNITSMLMDHDEKSIIITC---------GGQLGFFDILY 171
             K K                D+I  + +  D++ + I+             + F+  LY
Sbjct: 511 GTKNKFLPVLKLHHDTTLELTDDILCVRVSPDDRYLAISLLDNTVKVFFLDSMKFYLSLY 570

Query: 172 KKNITSNNISNEYNDEFLCSNLMVHNSKIVTTTLNGNISIFSKNPWGYMEGKIKASKDAI 231
              +   +I   ++ +            I+T++ + NI I+  + +G     + A +D+I
Sbjct: 571 GHKLPVLSIDISFDSKM-----------IITSSADKNIKIWGLD-FGDCHKSLFAHQDSI 618

Query: 232 STFVKFDDYHIFFGTSDGFIKTAQIKPSKLGETF----SKHNNKESIEKLSINKNKNLLA 287
                    H FF  S    K A +K    GE F      + ++  +  L++  +   + 
Sbjct: 619 MNVKFLPQSHNFFSCS----KDAVVKYWD-GEKFECIQKLYAHQSEVWALAVATDGGFVV 673

Query: 288 QISNDYSINFYQ 299
             S+D+SI  ++
Sbjct: 674 SSSHDHSIRIWE 685

 Score = 20.8 bits (42), Expect = 0.14
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 56  HDKAVKYVCFSKKGKEILAASSDNSCSITD 85
           HD A+  +  +  GK ++  S+D +    D
Sbjct: 472 HDAAIWSLDLTSDGKRLVTGSADKTVKFWD 501

 Score = 17.3 bits (33), Expect = 1.6
 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)

Query: 76  SSDNSCSITDISG-VCIWNNICHK 98
           S DN    T  +G + IWN   HK
Sbjct: 400 SDDNKLLATASNGSLKIWNIKTHK 423

 Score = 15.4 bits (28), Expect = 6.0
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 53  IQNHDKAVK 61
           IQN DK ++
Sbjct: 274 IQNADKTIE 282

Lambda     K      H
   0.320    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 659
Number of extensions: 43
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 10
Length of query: 323
Length of database: 943
Length adjustment: 36
Effective length of query: 287
Effective length of database: 907
Effective search space:   260309
Effective search space used:   260309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 27 (15.3 bits)
S2: 27 (15.0 bits)