>YMR061W RNA14 SGDID:S000004665, Chr XIII from 392754-394787,
           Verified ORF, "Cleavage and polyadenylation factor I (CF
           I) component involved in cleavage and polyadenylation of
           mRNA 3' ends; bridges interaction between Rna15p and
           Hrp1p in the CF I complex"
          Length = 677

 Score = 45.4 bits (106), Expect = 2e-08
 Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 34/167 (20%)

Query: 303 LRKFYQKWLHHATKYLDKVWKCYCAFEKASDNFXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
           LR+FY+K L      L+K+W  Y  +E+  ++                            
Sbjct: 186 LREFYKKMLCVPFDNLEKMWNRYTQWEQEINSLTARKFIGELSAE--------------- 230

Query: 363 XXKNAFKELCIIYKE-MNVDKKCKIILPINKKWKIENSI------------LYIKWMKII 409
                + +   +Y+E +NV    K   PIN +   + +I            L I W+  I
Sbjct: 231 -----YMKARSLYQEWLNVTNGLKRASPINLRTANKKNIPQPGTSDSNIQQLQI-WLNWI 284

Query: 410 NFEKTNPLKLTIPLVFKRIKYTYEQALIHLQFNSDLWFSYFQYLLLN 456
            +E+ N L L+  ++ +RI Y Y+Q + ++ F++++W+ Y  Y+  N
Sbjct: 285 KWERENKLMLSEDMLSQRISYVYKQGIQYMIFSAEMWYDYSMYISEN 331

 Score = 33.1 bits (74), Expect = 9e-05
 Identities = 41/186 (22%), Positives = 74/186 (39%), Gaps = 19/186 (10%)

Query: 793 SDYEKIEERKKYFVKYFHIKKRKRRIFVFTHFLNFIKRNYDETIWRYYVGLILK-XXXXX 851
           SD    E+    + +    K+R++  FVF  ++N +KR    +  R   G   K      
Sbjct: 388 SDVNSGEDNNTEYEQELLYKQREKLTFVFCVYMNTMKRISGLSAARTVFGKCRKLKRILT 447

Query: 852 XXXXXXXANVERRILNNEKRAMYIMNEGYXXXXXXXXXXXXYINFLLEKGYINNIRTLI- 910
                  A +E +  N+ K A  ++  G             Y++FL+     + I+TL  
Sbjct: 448 HDVYVENAYLEFQNQNDYKTAFKVLELGLKYFQNDGVYINKYLDFLIFLNKDSQIKTLFE 507

Query: 911 --------YEYIHEIYKK---FYNSYKENNNI--IDKKIYKTKISQNEFNLFEPNYLI-- 955
                      + EIYKK   + + +   NN+  ++K+ ++    +N   +F   Y I  
Sbjct: 508 TSVEKVQDLTQLKEIYKKMISYESKFGNLNNVYSLEKRFFERFPQENLIEVFTSRYQIQN 567

Query: 956 --LLKK 959
             L+KK
Sbjct: 568 SNLIKK 573

 Score = 21.2 bits (43), Expect = 0.36
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 913  YIHEIYKKFYNS--YKENNNIIDKKIYKTKISQNEFNLFEPNYLILLKKKNKSCEKIWNI 970
            Y+   Y +F N   YK    +++  +   K  QN+  ++   YL  L   NK  +     
Sbjct: 451  YVENAYLEFQNQNDYKTAFKVLELGL---KYFQND-GVYINKYLDFLIFLNKDSQIKTLF 506

Query: 971  LIHIEIFYGDIRNLNKIYDMKIKYDSGYNLEENKHIL 1007
               +E    D+  L +IY   I Y+S +    N + L
Sbjct: 507  ETSVEKVQ-DLTQLKEIYKKMISYESKFGNLNNVYSL 542

 Score = 20.8 bits (42), Expect = 0.47
 Identities = 5/15 (33%), Positives = 12/15 (80%)

Query: 911 YEYIHEIYKKFYNSY 925
           Y  + E+Y++F+N++
Sbjct: 58  YAKVREVYEQFHNTF 72

 Score = 20.8 bits (42), Expect = 0.47
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 10/49 (20%)

Query: 228 VELLYILIKIYNTNLIANNEITKLLYDPFKHT---------HHGNRNMN 267
           +E+     +I N+NLI   E+T  +Y+  + +         HHG+ NM+
Sbjct: 556 IEVFTSRYQIQNSNLIKKLELT-YMYNEEEDSYFSSGNGDGHHGSYNMS 603

 Score = 19.2 bits (38), Expect = 1.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 302 KLRKFYQKWLH 312
           K R  YQ+WL+
Sbjct: 233 KARSLYQEWLN 243

 Score = 18.1 bits (35), Expect = 3.0
 Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 228 VELLYILIK--IYNTNLIANNEITKLLYD 254
           ++LL ++ K   +NTNL+   ++   L D
Sbjct: 636 LDLLSVIPKRQYFNTNLLDAQKLVNFLND 664

 Score = 17.3 bits (33), Expect = 5.2
 Identities = 5/15 (33%), Positives = 10/15 (66%)

Query: 1336 QNNNIKLSDNSIDYL 1350
            +NN++ L    +DY+
Sbjct: 108  ENNDLSLWSTYLDYI 122

 Score = 17.3 bits (33), Expect = 5.2
 Identities = 5/16 (31%), Positives = 11/16 (68%)

Query: 1025 NAFLDNFYTDEYNQNN 1040
            + +++N Y +  NQN+
Sbjct: 449  DVYVENAYLEFQNQND 464

 Score = 16.9 bits (32), Expect = 6.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 189 LFLSFLYFTYHTSSIHEYINFL 210
           L L   YF      I++Y++FL
Sbjct: 472 LELGLKYFQNDGVYINKYLDFL 493

 Score = 16.9 bits (32), Expect = 6.8
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 651 NEEDGNKCGDNDEDGNKCGDNDEDGNKCGDNDEDGN 686
           NEE+ +     + DG+    N    ++    +E GN
Sbjct: 581 NEEEDSYFSSGNGDGHHGSYNMSSSDRKRLMEETGN 616

 Score = 16.5 bits (31), Expect = 8.8
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 204 HEYINFL 210
           +EY+NFL
Sbjct: 162 NEYLNFL 168

 Score = 16.5 bits (31), Expect = 8.8
 Identities = 8/37 (21%), Positives = 18/37 (48%)

Query: 730 YNDEDGNKLVYNDENGNKLGDNDENGNKLGDNDENGN 766
           YN+E+ +     + +G+    N  + ++    +E GN
Sbjct: 580 YNEEEDSYFSSGNGDGHHGSYNMSSSDRKRLMEETGN 616

Lambda     K      H
   0.318    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2761
Number of extensions: 206
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 16
Length of query: 1384
Length of database: 677
Length adjustment: 44
Effective length of query: 1340
Effective length of database: 633
Effective search space:   848220
Effective search space used:   848220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 31 (17.1 bits)
S2: 31 (16.5 bits)