>YNL112W DBP2 SGDID:S000005056, Chr XIV from
           413641-414913,415916-416283, Verified ORF, "Essential
           ATP-dependent RNA helicase of the DEAD-box protein
           family, involved in nonsense-mediated mRNA decay and
           rRNA processing"
          Length = 546

 Score =  291 bits (745), Expect = 5e-83
 Identities = 174/441 (39%), Positives = 252/441 (57%), Gaps = 19/441 (4%)

Query: 194 SYVEKIRRIFYIDVNGDDIPAPIKNFKDMKFPKAILKGLRKKNIKKPTQIQMQGLPSILL 253
           S + + R+   + ++G DIP PI  F +  FP  +L  ++ +   KPT IQ QG P  L 
Sbjct: 90  SEIAQFRKENEMTISGHDIPKPITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALS 149

Query: 254 GRDIIGIAFTGSGKTIVFVLPLIMKCLEAEIRCKLEEGEGPIGLIICPSRELATQTHNII 313
           GRD++GIA TGSGKT+ + LP I+      +   L  G+GPI L++ P+RELA Q     
Sbjct: 150 GRDMVGIAATGSGKTLSYCLPGIVHINAQPL---LAPGDGPIVLVLAPTRELAVQIQTEC 206

Query: 314 KYFCEFLYKDNFPTLRSLCMIGGISAYEQGREIQKGIHMIVATPGRLNDMLNKKRMTLEQ 373
             F       +   +R+ C+ GG+   +Q R++ +G  +++ATPGRL DML   +  L++
Sbjct: 207 SKF------GHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKR 260

Query: 374 CRYLCFDEADRLIDLGFEEEVRNTLDHFSNQRQTLLFSATMPKKIQEFAKSTLVNPIIIN 433
             YL  DEADR++D+GFE ++R  +D     RQTL++SAT PK++++ A   L +PI + 
Sbjct: 261 VTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQ 320

Query: 434 VGR---AGAANLDVIQEV--EYVKEEFKLSYLLEVLQKTGPPVLIFCENKKDVDDVHEYL 488
           VG    + + N+  I EV  ++ K +    YL    Q      LIF   K+  DD+ +YL
Sbjct: 321 VGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTLIFASTKRMCDDITKYL 380

Query: 489 LLKGVNAVAIHGNLGQSERQEAINLFREGKKDILVGTDVASKGLDFPSIEHVINYDMPKD 548
              G  A+AIHG+  Q ER   +  FR G+  I+V TDVA++G+D   I +VINYDMP +
Sbjct: 381 REDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGN 440

Query: 549 IENYVHRIGRTGRCGKTGIATTFINKNQEEAILLDLKALLIEAKQKIPPFLEMLD--SKG 606
           IE+YVHRIGRTGR G TG A +F  + Q + +   L +++ EA Q IPP L   D  S G
Sbjct: 441 IEDYVHRIGRTGRAGATGTAISFFTE-QNKGLGAKLISIMREANQNIPPELLKYDRRSYG 499

Query: 607 LNLKEIGGVKGCSYCGGLGHR 627
                 GG +G    GG G R
Sbjct: 500 GGHPRYGGGRGGR--GGYGRR 518

 Score = 16.5 bits (31), Expect = 3.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 335 GGISAYEQGREIQK 348
           GG S Y Q +E+ K
Sbjct: 47  GGRSNYNQPQELIK 60

Lambda     K      H
   0.319    0.138    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 788
Number of extensions: 34
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 665
Length of database: 546
Length adjustment: 37
Effective length of query: 628
Effective length of database: 509
Effective search space:   319652
Effective search space used:   319652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 27 (15.3 bits)
S2: 27 (15.0 bits)