>YER006W NUG1 SGDID:S000000808, Chr V from 162722-164284, Verified
           ORF, "GTPase that associates with nuclear 60S
           pre-ribosomes, required for export of 60S ribosomal
           subunits from the nucleus"
          Length = 520

 Score = 57.8 bits (138), Expect = 1e-12
 Identities = 71/307 (23%), Positives = 117/307 (38%), Gaps = 59/307 (19%)

Query: 130 DEHITDDFINNLQFSDYINLDFMDKMKIYEKIKECHYKDLNEKYIYVDNLLDVIKNSDVV 189
           D  + DD    L   DY N+DF      Y +  E   +    +  Y      VI  SDV+
Sbjct: 130 DADVRDD---ELDVIDY-NIDF------YGEDVEGESELEKSRKAYDKIFKSVIDASDVI 179

Query: 190 FYVIDIRNPLIYLDKDIINFI-NSCKKQIIIILNKCDLLDNGIIEQWVVFFRTYFITIPF 248
            YV+D R+P     + +   +  S  K++I+ILNK DL+   ++EQW+ + ++ F TIP 
Sbjct: 180 LYVLDARDPESTRSRKVEEAVLQSQGKRLILILNKVDLIPPHVLEQWLNYLKSSFPTIPL 239

Query: 249 ISFMNKSIQPSYLCTKXXXXXXXXXXXXXXXXXXXXXHKMSNTKSC-----PIKNIIENL 303
            +        S+                          K+S T +       +K    N 
Sbjct: 240 RASSGAVNGTSF------------------------NRKLSQTTTASALLESLKTYSNNS 275

Query: 304 SKNNPITYGVIGHIYTGRNSFINTLL-------------KEFNYINNLKNEQIDIKLTHN 350
           +    I  GVIG+   G++S IN LL              E     +L+    +IK+ + 
Sbjct: 276 NLKRSIVVGVIGYPNVGKSSVINALLARRGGQSKACPVGNEAGVTTSLR----EIKIDNK 331

Query: 351 INLYVKPGLILKKELNNLQLIKKLHVLKHXXXXXXXXXXXXXXXGKNLIRLMNIIKEDEL 410
           + +   PG+    E  N +  K  H  +                   L+ +  + K DE+
Sbjct: 332 LKILDSPGICFPSE--NKKRSKVEHEAELALLNALPAKHIVDPYPAVLMLVKRLAKSDEM 389

Query: 411 ANKFKEM 417
              FK++
Sbjct: 390 TESFKKL 396

 Score = 18.1 bits (35), Expect = 0.87
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 5/33 (15%)

Query: 203 DKDIINFINSCKKQIIIILNKCDLLDNGIIEQW 235
           DK  ++ IN+  KQ  I  N     ++ I+ +W
Sbjct: 465 DKQNLSTINTGTKQAPIAAN-----ESTIVSEW 492

Lambda     K      H
   0.320    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 471
Number of extensions: 22
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 537
Length of database: 520
Length adjustment: 35
Effective length of query: 502
Effective length of database: 485
Effective search space:   243470
Effective search space used:   243470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 26 (14.9 bits)
S2: 26 (14.6 bits)