>YJL050W MTR4 SGDID:S000003586, Chr X from 342439-345660, Verified
           ORF, "Dead-box family ATP dependent helicase required
           for mRNA export from the nucleus; co-factor of the
           exosome complex, required for 3' end formation of 5.8S
           rRNA"
          Length = 1073

 Score =  530 bits (1364), Expect = e-154
 Identities = 283/576 (49%), Positives = 382/576 (66%), Gaps = 14/576 (2%)

Query: 203 IENSKTINNDDVLVLEEFGG---DVNCIHKCVRPQSYVHNEIKEP--LIPARTYKFELDT 257
           ++ SK + N + L +E+ G         H+   P +Y +  I E   +  ARTY F LD 
Sbjct: 93  VDASKGLTNSETLQVEQDGKVRLSHQVRHQVALPPNYDYTPIAEHKRVNEARTYPFTLDP 152

Query: 258 FQKKSIECLERNESVLVSAHTSAGKTVIAEYAIALGLRDKQRVIYTSPIKALSNQKYRDL 317
           FQ  +I C++R ESVLVSAHTSAGKTV+AEYAIA  L++KQRVIYTSPIKALSNQKYR+L
Sbjct: 153 FQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYREL 212

Query: 318 GEEFKDVGLITGDISINPEASIIVMTTEILRSMLYRGSSLTKEVKWVIFDEIHYMRDRDR 377
             EF DVGL+TGDI+INP+A  +VMTTEILRSMLYRGS + +EV WVIFDE+HYMRD++R
Sbjct: 213 LAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKER 272

Query: 378 GVIWEETIILLPLMVRFIFLSATIPNGIQFAEWVSSIKSQACHIVYTDYRPTPLQHYIYP 437
           GV+WEETIILLP  VR++FLSATIPN ++FAEW+  I SQ CHIVYT++RPTPLQHY++P
Sbjct: 273 GVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFP 332

Query: 438 TSSESVFLICDENKDFKKDNFIKAV----NVIKEKMNTSEENHHQQHINKYTKKMRKTTY 493
              + ++L+ DE   F+++NF KA+    N I +  N+++    +    K          
Sbjct: 333 AHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKG 392

Query: 494 DIEKIVQMCHSRNYTPLIIFAFSKKECEVNATAMHKIDLTSDTEKEVIKELYENAIRILA 553
           DI KIV+M   + Y P+I+F+FSK++CE  A  M K+D  SD EKE + +++ NAI +L 
Sbjct: 393 DIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLP 452

Query: 554 DDDRSLPQVQFXXXXXXXXXXXXXXXXXXXXKEIIEIMFQESLLKVLFSTETFSMGINMP 613
           + DR LPQ++                     KE+IEI+FQE  LKVLF+TETFS+G+NMP
Sbjct: 453 ETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMP 512

Query: 614 AKTVVFTSLTKFDGLEKRLITSGEYIQMXXXXXXXXXXXXXIVIIMLDTPLHWREAHKLF 673
           AKTVVFTS+ K+DG + R ++ GEYIQM             IVI+M+D  +  + A  + 
Sbjct: 513 AKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMV 572

Query: 674 VGEANRLVSQFHLGYNMILNLLRIEGITPEFMIERSFIQYQMKKNLSQKILAKKKVEEHI 733
            G+A+RL S FHLGYNMILNL+R+EGI+PEFM+E SF Q+Q    +S  ++ KK  E  +
Sbjct: 573 KGQADRLDSAFHLGYNMILNLMRVEGISPEFMLEHSFFQFQ--NVISVPVMEKKLAE--L 628

Query: 734 KQIFNHLTNIHLDENNNEITKDELLTKIMYNNYEQI 769
           K+ F+ +  +  +EN  E  + E   K    +  Q+
Sbjct: 629 KKDFDGI-EVEDEENVKEYHEIEQAIKGYREDVRQV 663

 Score =  109 bits (273), Expect = 1e-27
 Identities = 75/260 (28%), Positives = 131/260 (50%), Gaps = 13/260 (5%)

Query: 1102 IEKCRFIVLKKELKNMLVLLESLNYIEVSYNLENLKNE--------KDIKTIENSITEH- 1152
            IE   F+ L K++  +   L S N +  S  LE L  +        +D+K ++  I+E  
Sbjct: 816  IEDEDFLKLMKKIDVLNTKLSS-NPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQ 874

Query: 1153 --IKNERIMNIKNETYKNNHEEKNYVVTMKGQIASAILSVDELVISELFFSNFFSKYNYD 1210
              I+ + +   K    +      N ++ +KG++A  I S DEL+++EL F+  F++   +
Sbjct: 875  AVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPE 934

Query: 1211 YICAFLSCFVYDESTSKEITINDPILVEGYQQIIKTANHVATKMNECGMNINLKDYIDKF 1270
               A LSCF + E   KE     P L E  + + + A  +A  M +  + +  KDY++ F
Sbjct: 935  QAAALLSCFAFQERC-KEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVESF 993

Query: 1271 KSAIMPIALLWARGHSFVEILSDSQIYEGSIIRTLRRLDELIRQMICAFRGINNDSMCET 1330
            +  +M +   W RG +F +I   + +YEGS+IR  +RL+EL+++++     I N S+ E 
Sbjct: 994  RHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEK 1053

Query: 1331 LTLATNKLRRGIPFSPSLYL 1350
            +      + R I  + SLYL
Sbjct: 1054 MEAVLKLIHRDIVSAGSLYL 1073

 Score = 21.9 bits (45), Expect = 0.33
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 10/46 (21%)

Query: 7  DLFDVFEEN--EIP--------EIISIKDEEQQQEKKNHIIQNDNE 42
          DLFDVFEE   E+P           ++ D     + K H ++ + E
Sbjct: 5  DLFDVFEETPVELPTDSNGEKNADTNVGDTPDHTQDKKHGLEEEKE 50

 Score = 20.4 bits (41), Expect = 0.97
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 992  NIKCVYQLSAVVLSIDKPFDKKNEEQIENIKTKYNTMVTCLKG 1034
            N+  V  +   +  + K FD    E  EN+K +Y+ +   +KG
Sbjct: 614  NVISVPVMEKKLAELKKDFDGIEVEDEENVK-EYHEIEQAIKG 655

 Score = 18.5 bits (36), Expect = 3.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 293 GLRDKQRVIYTSPIKALS 310
           G R+  R + T P  ALS
Sbjct: 655 GYREDVRQVVTHPANALS 672

 Score = 18.1 bits (35), Expect = 4.8
 Identities = 6/12 (50%), Positives = 7/12 (58%)

Query: 810 YTNYSSYSTQHY 821
           YTN+     QHY
Sbjct: 318 YTNFRPTPLQHY 329

Lambda     K      H
   0.318    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2862
Number of extensions: 114
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 6
Length of query: 1350
Length of database: 1073
Length adjustment: 47
Effective length of query: 1303
Effective length of database: 1026
Effective search space:  1336878
Effective search space used:  1336878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 33 (18.0 bits)
S2: 33 (17.3 bits)