Query= PFF0115c Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) elongation
factor G, putative
(937 letters)
>YLR069C MEF1 SGDID:S000004059, Chr XII from 273916-271631, reverse
complement, Verified ORF, "Mitochondrial elongation
factor involved in translational elongation"
Length = 761
Score = 199 bits (506), Expect = 6e-55
Identities = 112/281 (39%), Positives = 163/281 (58%), Gaps = 8/281 (2%)
Query: 102 RNIGIIAHIDAGKTTTTERILYYTNVIKKIGEVHEGLST---MDYLDIEREKGITINAAV 158
RNIGI AHID+GKTT TER+LYYT IK I EV + MD +D+EREKGITI +A
Sbjct: 71 RNIGISAHIDSGKTTFTERVLYYTKRIKAIHEVRGRDNVGAKMDSMDLEREKGITIQSAA 130
Query: 159 TTCYWNGSEKNLEDYRINIIDTPGHVDFTAEVEKSLRVLDGGVVVFDSSEGVESQSETVW 218
T C W+ KN Y N+IDTPGH+DFT EVE++LRVLDG V+V + GV+SQ+ TV
Sbjct: 131 TYCSWDKEGKN---YHFNLIDTPGHIDFTIEVERALRVLDGAVLVVCAVSGVQSQTVTVD 187
Query: 219 KQANQYNISRIIFLNKLDKVGANFEGCXXXXXXXXXXXXXXXYVPVFEMSKFISTIDILK 278
+Q +YN+ R+ F+NK+D++G++ +P+ S +D++
Sbjct: 188 RQMRRYNVPRVTFINKMDRMGSDPFRAIEQLNSKLKIPAAAVQIPIGSESSLSGVVDLIN 247
Query: 279 EKMIVYKNAHDFIFE--DIPKEHYNLFLKYKNLLFEQIAENFNSFLDNYLNDKAMNIQEI 336
I K + I E +P+ L + + LL E +A+ + + +L +K Q+I
Sbjct: 248 RVAIYNKGDNGEIIEKGPVPENLKPLMEEKRQLLIETLADVDDEMAEMFLEEKEPTTQQI 307
Query: 337 EYYIRKLVVEEKYNVVMCGSALKNKNVQMLLDMVVKYLPSP 377
+ IR+ + + V+ GSAL N +Q +LD +V YLP+P
Sbjct: 308 KDAIRRSTIARSFTPVLMGSALANTGIQPVLDAIVDYLPNP 348
Score = 166 bits (421), Expect = 4e-45
Identities = 117/452 (25%), Positives = 209/452 (46%), Gaps = 54/452 (11%)
Query: 490 DSISDELNESNIKNYKRKMVGLIYKIMNDQHLGNINYVRIYEGQINRGEFIYNNRTXXXX 549
D ++E + + ++ VGL +K+ ++ G + YVR+Y+G++ +G +I N +T
Sbjct: 357 DVSNNEAKVNLVPAVQQPFVGLAFKLEEGKY-GQLTYVRVYQGRLRKGNYITNVKTGKKV 415
Query: 550 XXXXXXXXXXXXXYELENAKAGDIVGLVGLKDTQIGDTLSNVFLRAELKRXXXXXXXXXX 609
+++ +G+I G+ D GDT ++ ++ +
Sbjct: 416 KVARLVRMHSSEMEDVDEVGSGEICATFGI-DCASGDTFTDGSVQYSMSSMYVPDAVVSL 474
Query: 610 XXXXXXXXXXXXXXXALIKIKKEDHSFFYHINQDTKDLLISGVGELHLQIIINKIEKDFN 669
AL + +KED +F + ++K+ +ISG+GELHL+I + ++ +++N
Sbjct: 475 SITPNSKDASNFSK-ALNRFQKEDPTFRVKFDPESKETIISGMGELHLEIYVERMRREYN 533
Query: 670 IPIIYGKPQISYKETFVESVKARGKYIKQSGGRGQYGDVHIEIEPMYNYXXXXXXXXXXX 729
+ + GKPQ+SY+E+ + KQSGG GQYG V + P+
Sbjct: 534 VDCVTGKPQVSYRESITIPADFDYTHKKQSGGAGQYGRVIGTLSPV-------------- 579
Query: 730 XXXXXXVXXXXXXXXXXXXXXXDNNSMNINTSEVXXXXXXXXXXTCGAIPSVYFDAIYTG 789
D NI + + G IP Y A G
Sbjct: 580 ---------------------DDITKGNIFETAIVG----------GRIPDKYLAACGKG 608
Query: 790 IREQCNMGILFNSPVINIVVRIVDGSFHPVDSNEHAFKLAAGLAIKEAAKKTSIRLLEPI 849
E C G L V+++ + I DG+ H VDSNE +FK A A ++A + ++EPI
Sbjct: 609 FEEVCEKGPLIGHRVLDVKMLINDGAIHAVDSNELSFKTATMSAFRDAFLRAQPVIMEPI 668
Query: 850 MNLNVTVPTEYLGDVISDLVKKRGKIQHIDES-DEFTKEITARAPMASVLSYVSDLRKIT 908
MN++VT P E+ G+VI L K + IQ + DEFT + A ++++ + + LR T
Sbjct: 669 MNVSVTSPNEFQGNVIGLLNKLQAVIQDTENGHDEFT--LKAECALSTMFGFATSLRAST 726
Query: 909 KGRGNYTMTLHKYSLVPEYIQEQIL---QKKE 937
+G+G +++ Y+ ++Q++++ QKK+
Sbjct: 727 QGKGEFSLEFSHYAPTAPHVQKELISEFQKKQ 758
Score = 20.0 bits (40), Expect = 0.61
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 384 YKKQIIYIHDVNRRGEKIVPANSES-NLKKEK 414
Y K+I IH+V RG V A +S +L++EK
Sbjct: 93 YTKRIKAIHEV--RGRDNVGAKMDSMDLEREK 122
Score = 18.1 bits (35), Expect = 2.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 182 GHVDFTAEVEKSLRVLDG 199
GH +FT + E +L + G
Sbjct: 700 GHDEFTLKAECALSTMFG 717
Lambda K H
0.317 0.136 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1341
Number of extensions: 51
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 6
Length of query: 937
Length of database: 761
Length adjustment: 42
Effective length of query: 895
Effective length of database: 719
Effective search space: 643505
Effective search space used: 643505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 30 (16.6 bits)
S2: 30 (16.2 bits)