Query= PFF0160c Pf Annotation|Plasmodium_falciparum_Sanger|(protein coding) dihydroorotate dehydrogenase, mitochondrial precursor (569 letters)
>YKL216W URA1 SGDID:S000001699, Chr XI from 25216-26160, Verified
           ORF, "Dihydroorotate dehydrogenase, catalyzes the fourth
           enzymatic step in the de novo biosynthesis of
           pyrimidines, converting dihydroorotic acid into orotic
           acid"
          Length = 314

 Score = 54.3 bits (129), Expect = 7e-12
 Identities = 30/98 (30%), Positives = 54/98 (55%)

Query: 470 ENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYS 529
           +N  GG+ G  +K  +   +   Y     +I +I +GGI SG DA E +  GAS+ Q+ +
Sbjct: 216 KNGFGGIGGEYVKPTALANVRAFYTRLRPEIKVIGTGGIKSGKDAFEHLLCGASMLQIGT 275

Query: 530 CLVFNGMKSAVQIKRELNHLLYQRGYYNLKEAIGRKHS 567
            L   G+K   +I++EL  ++  +GY ++ +  G+ +S
Sbjct: 276 ELQKEGVKIFERIEKELKDIMEAKGYTSIDQFRGKLNS 313

 Score = 31.2 bits (69), Expect = 6e-05
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 10/94 (10%)

Query: 257 GNAKPRIFRDVESRSIINSCGFNNMGCDKVTENLILFRKRQEEDKLLSKHIVGVSIGKNK 316
           GN +PR +  V   SI NS G  N G D     ++  +K   +   +   + G+SI +N 
Sbjct: 55  GNPEPR-YISVPLGSI-NSMGLPNEGIDYYLSYVLNRQKNYPDAPAIFFSVAGMSIDENL 112

Query: 317 DTVNIVDDLKYCINKIGRYADYIAINVSSPNTPG 350
           + +  + D          +     +N+S PN PG
Sbjct: 113 NLLRKIQD--------SEFNGITELNLSCPNVPG 138

 Score = 18.1 bits (35), Expect = 0.54
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 20/68 (29%)

Query: 484 ISTKFICEMYNYTNKQIPIIASGGIF----SGLDALEKIEAGASVCQLYSCLVFNGMKSA 539
           ++TKF+   Y     + P + + G+       LD L   +AGA +            KSA
Sbjct: 5   LTTKFLNNTY-----ENPFMNASGVHCMTTQELDELANSKAGAFIT-----------KSA 48

Query: 540 VQIKRELN 547
             ++RE N
Sbjct: 49  TTLEREGN 56

 Score = 16.5 bits (31), Expect = 1.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 223 VAAGFDKNGVCIDSILKLGFSFIEIGT 249
           +  G  K+G      L  G S ++IGT
Sbjct: 249 IGTGGIKSGKDAFEHLLCGASMLQIGT 275

 Score = 15.8 bits (29), Expect = 2.7
 Identities = 7/17 (41%), Positives = 11/17 (64%), Gaps = 1/17 (5%)

Query: 99  YVSVPFKINIRNLGTSN 115
           Y+SVP   +I ++G  N
Sbjct: 61  YISVPLG-SINSMGLPN 76
Lambda     K      H
   0.319    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 465
Number of extensions: 29
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 5
Length of query: 569
Length of database: 314
Length adjustment: 32
Effective length of query: 537
Effective length of database: 282
Effective search space:   151434
Effective search space used:   151434
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 25 (14.4 bits)
S2: 25 (14.2 bits)