>YOR319W HSH49 SGDID:S000005846, Chr XV from 912819-913460, Verified
           ORF, "U2-snRNP associated splicing factor with
           similarity to the mammalian splicing factor SAP49;
           proposed to function as a U2-snRNP assembly factor along
           with Hsh155p and binding partner Cus1p; contains two RNA
           recognition motifs (RRM)"
          Length = 213

 Score = 44.7 bits (104), Expect = 4e-09
 Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 20/178 (11%)

Query: 481 KLFNLFSIYGFVTRIKILREKPDAALIQYSNYIFSSLAQEYLQRARISNQSIEVNFSKIH 540
           +L+ LF     V RIK  ++K    L  Y  Y F     +   +  I    I  N  +++
Sbjct: 24  QLYELFIQINPVLRIKYPKDK---VLQAYQGYAFIEFYNQGDAQYAIK---IMNNTVRLY 77

Query: 541 DIRVSQRQQNNESHNTKIFSNYDQRYVLSDQGKYIKAACRPTKCLFISNLNENVNEDCVM 600
           D  +  RQ  N +  T + SN  +  +L            P   LFI NL ++++ D ++
Sbjct: 78  DRLIKVRQVTNSTGTTNLPSNISKDMIL------------PIAKLFIKNLADSIDSDQLV 125

Query: 601 NLFNKYGN-INKLQFLPVKEGKRHLSIIVEMNTEDMATKALMDLHNFYLKDRYIKVSY 657
            +FNK+G  I + +   +  GK   + +   + E  A  A+  L+N  + +  I V Y
Sbjct: 126 KIFNKFGKLIREPEIFYLSNGKLKCAYVYFEDFE-KADLAIKSLNNQLVANNRITVDY 182

 Score = 33.5 bits (75), Expect = 1e-05
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 324 NLHYPVDIELIYYLFSKCGTV--EKIITFSRNPVLYQALVQFDNVETAKEAIKTLHNRNI 381
           NL   +D + +  +F+K G +  E  I +  N  L  A V F++ E A  AIK+L+N+ +
Sbjct: 114 NLADSIDSDQLVKIFNKFGKLIREPEIFYLSNGKLKCAYVYFEDFEKADLAIKSLNNQLV 173

Query: 382 YDGCNTINIQYSF 394
            +  N I + Y+F
Sbjct: 174 AN--NRITVDYAF 184

 Score = 25.8 bits (55), Expect = 0.002
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 16/96 (16%)

Query: 320 VSVINLHYPVDIELIYYLFSKCGTVEKIITFSRNPVL--YQ--ALVQFDNVETAKEAIKT 375
           V V N+   +  E +Y LF +   V +I  + ++ VL  YQ  A ++F N   A+ AIK 
Sbjct: 11  VYVGNIDPRITKEQLYELFIQINPVLRI-KYPKDKVLQAYQGYAFIEFYNQGDAQYAIKI 69

Query: 376 LHN-----------RNIYDGCNTINIQYSFLKELVI 400
           ++N           R + +   T N+  +  K++++
Sbjct: 70  MNNTVRLYDRLIKVRQVTNSTGTTNLPSNISKDMIL 105

Lambda     K      H
   0.317    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 354
Number of extensions: 16
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 3
Length of query: 663
Length of database: 213
Length adjustment: 30
Effective length of query: 633
Effective length of database: 183
Effective search space:   115839
Effective search space used:   115839
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 24 (13.9 bits)
S2: 24 (13.9 bits)