Query= PFF0345w Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) translation
initiation factor IF-2, putative
(977 letters)
>YAL035W FUN12 SGDID:S000000033, Chr I from 76428-79436, Verified ORF,
"GTPase, required for general translation initiation by
promoting Met-tRNAiMet binding to ribosomes and ribosomal
subunit joining; homolog of bacterial IF2"
Length = 1002
Score = 578 bits (1490), Expect = e-169
Identities = 313/604 (51%), Positives = 406/604 (67%), Gaps = 21/604 (3%)
Query: 390 EYRSAIVCILGHVDTGKTKLLDKLRHTNVQDNEAGGITQQIGATFFPKDVLXXXXXXXXX 449
+ RS I CILGHVDTGKTKLLDK+R TNVQ EAGGITQQIGAT+FP D +
Sbjct: 402 DLRSPICCILGHVDTGKTKLLDKIRQTNVQGGEAGGITQQIGATYFPIDAIKAKTKVMAE 461
Query: 450 XXXCLSK--GIMIIDTPGHESFYNLRKRGSSLCDIAILVIDLMHGLEQQTKESIQILKQR 507
G+++IDTPGHESF NLR RGSSLC+IAILVID+MHGLEQQT ESI++L+ R
Sbjct: 462 YEKQTFDVPGLLVIDTPGHESFSNLRSRGSSLCNIAILVIDIMHGLEQQTIESIKLLRDR 521
Query: 508 NCPFVIALNKIDRLYMWNKNDWSPFNNTFKKQKPDTQEEFHDRLKNIINELSEQGLNCQL 567
PFV+ALNKIDRLY W + F ++F KQ QEEF R I EL+EQGLN +L
Sbjct: 522 KAPFVVALNKIDRLYDWKAIPNNSFRDSFAKQSRAVQEEFQSRYSKIQLELAEQGLNSEL 581
Query: 568 YWENMNPRKYVSIVPTSAITGEGIADLIMVLVKLTQTFMLKNIQYHDKLECTVLEVKNIE 627
Y++N N KYVSIVPTSA+TGEG+ DL+ +L++LTQ M K + Y +E T+LEVK +E
Sbjct: 582 YFQNKNMSKYVSIVPTSAVTGEGVPDLLWLLLELTQKRMSKQLMYLSHVEATILEVKVVE 641
Query: 628 GLGTTIDVILTNGILRESDTIVLCGINGPIVTVIRALLTPQPLKELRIKNEYIHHKYIKA 687
G GTTIDVIL+NG LRE D IVLCG+NGPIVT IRALLTPQPL+ELR+K+EY+HHK +KA
Sbjct: 642 GFGTTIDVILSNGYLREGDRIVLCGMNGPIVTNIRALLTPQPLRELRLKSEYVHHKEVKA 701
Query: 688 CIGVKISANNLEEVLCGTSLFVVNNIXXXXXYKKKVMTDVSDVFNHVDKTGVGLYVMAST 747
+GVKI+AN+LE+ + G+ L VV VM D++ + + VD TG G+ V AST
Sbjct: 702 ALGVKIAANDLEKAVSGSRLLVVGPEDDEDELMDDVMDDLTGLLDSVDTTGKGVVVQAST 761
Query: 748 LGSLEALLIFLNDSKIPVFGVNIGTIQKKDVKKASIMREKGRPEYAVILAFDVKIDPEAE 807
LGSLEALL FL D KIPV + +G + K+DV KAS M EK PEYAV+L FDVK+D EAE
Sbjct: 762 LGSLEALLDFLKDMKIPVMSIGLGPVYKRDVMKASTMLEKA-PEYAVMLCFDVKVDKEAE 820
Query: 808 KEAALLGVEIMQRDIIYHLFDSFTAYLXXXXXXXXQSKITDAIFPCELSVINDCVFNKKD 867
+ A G++I D+IYHLFDSFTAY + + AIFPC L + + NK+
Sbjct: 821 QYAEQEGIKIFNADVIYHLFDSFTAYQEKLLEERRKDFLDYAIFPCVLQTLQ--IINKRG 878
Query: 868 PIVIGVRVECGQLKIGTPLFV--------PEKNIKIGNVVSVQSNKKNFDKARKGDE--- 916
P++IGV V G L++GTP+ + + +G V+S++ N + + +KG
Sbjct: 879 PMIIGVDVLEGTLRVGTPICAVKTDPTTKERQTLILGKVISLEINHQPVQEVKKGQTAAG 938
Query: 917 VCIKI---CGEPHVTYGKHFDSTQKIYSKITRESIDVLKE-YFRSELTMEDWKLVVQLKK 972
V +++ G+ + +G+H D +YS ++R SID LK+ FR ++ DW L+ +LK
Sbjct: 939 VAVRLEDPSGQQPI-WGRHVDENDTLYSLVSRRSIDTLKDKAFRDQVARSDWLLLKKLKV 997
Query: 973 IFNI 976
+F I
Sbjct: 998 VFGI 1001
Score = 20.0 bits (40), Expect = 0.84
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 493 LEQQTKESIQILKQRNCPFVIALN-KIDRLYMWNKNDWSPFNNTF-KKQKPDTQEEFHDR 550
L ++ KE ++L++R + + N K+ L + + P + KK+K TQE +
Sbjct: 237 LTRKQKEEKKLLERRRAALLSSGNVKVAGLAKKDGEENKPKKVVYSKKKKRTTQENASEA 296
Query: 551 LKNIINELSE 560
+K+ + SE
Sbjct: 297 IKSDSKKDSE 306
Score = 17.3 bits (33), Expect = 5.5
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 23 EEKREDDVKANENEENEPT 41
+E+ E+D NE PT
Sbjct: 14 DEEFEEDAAQNEEISATPT 32
Lambda K H
0.318 0.137 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1785
Number of extensions: 69
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 977
Length of database: 1002
Length adjustment: 44
Effective length of query: 933
Effective length of database: 958
Effective search space: 893814
Effective search space used: 893814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 31 (17.1 bits)
S2: 31 (16.5 bits)