Query= PFF0695w Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) hypothetical
protein, conserved
(255 letters)
>YPR112C MRD1 SGDID:S000006316, Chr XVI from 751917-749254, reverse
complement, Verified ORF, "Essential conserved protein
that associates with 35S precursor rRNA and is required
for its initial processing at the A(0)-A(2) cleavage
sites, shows partial nucleolar localization, contains
five consensus RNA-binding domains"
Length = 887
Score = 32.7 bits (73), Expect = 3e-05
Identities = 14/35 (40%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
Query: 114 EENRKMQKLNFD-HYNIENDVLNNKNIEEWEKTLK 147
EENRK +K++ + H NI++++ NK ++E+ +T+K
Sbjct: 125 EENRKKKKVDENKHSNIDDEIRKNKQLQEFMETMK 159
Score = 26.6 bits (57), Expect = 0.002
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 62 ELEQNAKRLVEEEMNLMHKNNEIKNYLETF-PLPKITYLSN---DNSIIQNELKRCEENR 117
++++N +++E+ KN +++ ++ET P ++T D SI +LKR EE+
Sbjct: 132 KVDENKHSNIDDEIR---KNKQLQEFMETMKPSSQVTSWEKVGIDKSIEDEKLKREEEDS 188
Query: 118 KMQ 120
+Q
Sbjct: 189 SVQ 191
Score = 20.8 bits (42), Expect = 0.10
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 87 YLETFPLPKITYLSNDNSIIQNELKRCEENRKMQKLNFDHYNIENDVLN-NKNIEEWEKT 145
YLE P T + + +I N + EEN K + ND++ NK++ E
Sbjct: 598 YLERGPKDCFTKPAEADDLINNTSAKEEENPVEVKPS------SNDLMEANKDVTEGSSN 651
Query: 146 LKKYEII--------LENSHNALINMELMNKYK 170
++I ++N + + N L +++K
Sbjct: 652 AHDEDVIDGPTVSIFIKNLNFSTTNQNLTDRFK 684
Score = 17.7 bits (34), Expect = 0.89
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 98 YLSNDNSIIQNELKRCEENRKMQKLNFDHYNIENDV--LNNKNIE 140
YL++DN + ++ KR + Q +N ++ DV L ++N E
Sbjct: 12 YLTDDN-LREHFTKRLRQKHSHQAVNGSGPDLITDVKILRDRNGE 55
Score = 14.2 bits (25), Expect = 9.8
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 49 LVNALPYIDSYDNELEQN 66
LVN D +NE +N
Sbjct: 257 LVNDDANSDEKENEKRRN 274
Lambda K H
0.314 0.130 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 413
Number of extensions: 25
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 6
Length of query: 255
Length of database: 887
Length adjustment: 33
Effective length of query: 222
Effective length of database: 854
Effective search space: 189588
Effective search space used: 189588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 25 (14.3 bits)
S2: 25 (14.2 bits)