Query= PFF0695w Pf Annotation|Plasmodium_falciparum_Sanger|(protein coding) hypothetical protein, conserved (255 letters)
>YPR112C MRD1 SGDID:S000006316, Chr XVI from 751917-749254, reverse
           complement, Verified ORF, "Essential conserved protein
           that associates with 35S precursor rRNA and is required
           for its initial processing at the A(0)-A(2) cleavage
           sites, shows partial nucleolar localization, contains
           five consensus RNA-binding domains"
          Length = 887

 Score = 32.7 bits (73), Expect = 3e-05
 Identities = 14/35 (40%), Positives = 27/35 (77%), Gaps = 1/35 (2%)

Query: 114 EENRKMQKLNFD-HYNIENDVLNNKNIEEWEKTLK 147
           EENRK +K++ + H NI++++  NK ++E+ +T+K
Sbjct: 125 EENRKKKKVDENKHSNIDDEIRKNKQLQEFMETMK 159

 Score = 26.6 bits (57), Expect = 0.002
 Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 7/63 (11%)

Query: 62  ELEQNAKRLVEEEMNLMHKNNEIKNYLETF-PLPKITYLSN---DNSIIQNELKRCEENR 117
           ++++N    +++E+    KN +++ ++ET  P  ++T       D SI   +LKR EE+ 
Sbjct: 132 KVDENKHSNIDDEIR---KNKQLQEFMETMKPSSQVTSWEKVGIDKSIEDEKLKREEEDS 188

Query: 118 KMQ 120
            +Q
Sbjct: 189 SVQ 191

 Score = 20.8 bits (42), Expect = 0.10
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 15/93 (16%)

Query: 87  YLETFPLPKITYLSNDNSIIQNELKRCEENRKMQKLNFDHYNIENDVLN-NKNIEEWEKT 145
           YLE  P    T  +  + +I N   + EEN    K +       ND++  NK++ E    
Sbjct: 598 YLERGPKDCFTKPAEADDLINNTSAKEEENPVEVKPS------SNDLMEANKDVTEGSSN 651

Query: 146 LKKYEII--------LENSHNALINMELMNKYK 170
               ++I        ++N + +  N  L +++K
Sbjct: 652 AHDEDVIDGPTVSIFIKNLNFSTTNQNLTDRFK 684

 Score = 17.7 bits (34), Expect = 0.89
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 98  YLSNDNSIIQNELKRCEENRKMQKLNFDHYNIENDV--LNNKNIE 140
           YL++DN + ++  KR  +    Q +N    ++  DV  L ++N E
Sbjct: 12  YLTDDN-LREHFTKRLRQKHSHQAVNGSGPDLITDVKILRDRNGE 55

 Score = 14.2 bits (25), Expect = 9.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 49  LVNALPYIDSYDNELEQN 66
           LVN     D  +NE  +N
Sbjct: 257 LVNDDANSDEKENEKRRN 274
Lambda     K      H
   0.314    0.130    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 413
Number of extensions: 25
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 6
Length of query: 255
Length of database: 887
Length adjustment: 33
Effective length of query: 222
Effective length of database: 854
Effective search space:   189588
Effective search space used:   189588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 25 (14.3 bits)
S2: 25 (14.2 bits)