>YDL126C CDC48 SGDID:S000002284, Chr IV from 238664-236157, reverse
           complement, Verified ORF, "ATPase in ER, nuclear
           membrane and cytosol with homology to mammalian p97; in
           a complex with Npl4p and Ufd1p participates in
           retrotranslocation of ubiquitinated proteins from the ER
           into the cytosol for degradation by the proteasome"
          Length = 835

 Score =  940 bits (2429), Expect = 0.0
 Identities = 468/765 (61%), Positives = 590/765 (77%), Gaps = 14/765 (1%)

Query: 22  KKKNLSRLIVEEATNDDNSVVALNTKRMEELNFFRGDTIIIKGKKRHSTICIILNDNDLD 81
           +KK  + L+V++A NDDNSV+A+N+  M++L  FRGDT+++KGKKR  T+ I+L D++L+
Sbjct: 29  RKKKDNMLLVDDAINDDNSVIAINSNTMDKLELFRGDTVLVKGKKRKDTVLIVLIDDELE 88

Query: 82  EGKIRINKVARKNLRVCLGDVVYVKSCPEIPYGKKIQVLPIDDTIEGLAKDTLFEIFLKP 141
           +G  RIN+V R NLR+ LGD+V +  CP+I Y  +I VLPI DTIEG+  + LF++FLKP
Sbjct: 89  DGACRINRVVRNNLRIRLGDLVTIHPCPDIKYATRISVLPIADTIEGITGN-LFDVFLKP 147

Query: 142 YFNESYRPVKKGDLFLVRGGFMSVEFKVVEVDPDDFCIVSPDTVIYYEGDPIKRDDEEK- 200
           YF E+YRPV+KGD F+VRGG   VEFKVV+V+P+++ +V+ DT+I++EG+PI R+DEE  
Sbjct: 148 YFVEAYRPVRKGDHFVVRGGMRQVEFKVVDVEPEEYAVVAQDTIIHWEGEPINREDEENN 207

Query: 201 LDEIGYDDIGGCKKQLAQIREMIELPLRHPGLFKTLGVKPPRGVLLYGPPGSGKTCIARA 260
           ++E+GYDDIGGC+KQ+AQIREM+ELPLRHP LFK +G+KPPRGVL+YGPPG+GKT +ARA
Sbjct: 208 MNEVGYDDIGGCRKQMAQIREMVELPLRHPQLFKAIGIKPPRGVLMYGPPGTGKTLMARA 267

Query: 261 VANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKNSPAIIFIDEIDSIAPKREKTN 320
           VANETGAFFFLINGPEVMSKMAGE+E+NLR+AFEEAEKN+PAIIFIDEIDSIAPKR+KTN
Sbjct: 268 VANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAPKRDKTN 327

Query: 321 GEVERRVVSQLLTLMDGIKSRGQVVVIAATNRQNSIDPALRRFGRFDREIDIGVPDDNGR 380
           GEVERRVVSQLLTLMDG+K+R  VVVIAATNR NSIDPALRRFGRFDRE+DIG+PD  GR
Sbjct: 328 GEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 387

Query: 381 FEILRIHTKNMKLSPDVKLEELASNTHGFVGADLAQLCTEAALTCIREKMDVIDLEDEII 440
            E+LRIHTKNMKL+ DV LE LA+ THG+VGAD+A LC+EAA+  IREKMD+IDL+++ I
Sbjct: 388 LEVLRIHTKNMKLADDVDLEALAAETHGYVGADIASLCSEAAMQQIREKMDLIDLDEDEI 447

Query: 441 DKEVLESMCVTQDHFNMALGTCNPSSLRETVVEVPNVKWDDIGGLDEVKSTLREMILYPI 500
           D EVL+S+ VT D+F  ALG  NPS+LRETVVE  NV WDD+GGLDE+K  L+E + YP+
Sbjct: 448 DAEVLDSLGVTMDNFRFALGNSNPSALRETVVESVNVTWDDVGGLDEIKEELKETVEYPV 507

Query: 501 DHPDKFEKFGMSPSRGVLFYGPPGCGKTLLAKAVASECSANFVSIKGPELLTMWFGESEA 560
            HPD++ KFG+SPS+GVLFYGPPG GKTLLAKAVA+E SANF+S+KGPELL+MW+GESE+
Sbjct: 508 LHPDQYTKFGLSPSKGVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESES 567

Query: 561 NVREVFDKARAAAPCVLFFDELDSIGTQRXXXXXXXXXXXXRVMNQLLTEIDGVGPKKNL 620
           N+R++FDKARAAAP V+F DELDSI   R            RV+NQLLTE+DG+  KKN+
Sbjct: 568 NIRDIFDKARAAAPTVVFLDELDSIAKARGGSLGDAGGASDRVVNQLLTEMDGMNAKKNV 627

Query: 621 FFIGATNRPELLDEALLRPGRLDQLIYIPLPDLGARISILTAILRKCPVAENVPIDFLAQ 680
           F IGATNRP+ +D A+LRPGRLDQLIY+PLPD  AR+SIL A LRK P+   + +  +A+
Sbjct: 628 FVIGATNRPDQIDPAILRPGRLDQLIYVPLPDENARLSILNAQLRKTPLEPGLELTAIAK 687

Query: 681 KTAGFSGADLAELCQXXXXXXXXXXXXXEEMXXXXXXXXXXXXXXXXXXXXXXDVHNKTE 740
            T GFSGADL  + Q                                      DV   T+
Sbjct: 688 ATQGFSGADLLYIVQRAAKYAIKDSIEAHRQ----------HEAEKEVKVEGEDV-EMTD 736

Query: 741 XXXXXXXXXXXXXIKYEITRHHFKEGLAGARRSVSQADLIKYDNF 785
                        + Y IT+ HF E +  A+RSVS A+L +Y+ +
Sbjct: 737 EGAKAEQEPEVDPVPY-ITKEHFAEAMKTAKRSVSDAELRRYEAY 780

Lambda     K      H
   0.319    0.139    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1947
Number of extensions: 81
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 828
Length of database: 835
Length adjustment: 42
Effective length of query: 786
Effective length of database: 793
Effective search space:   623298
Effective search space used:   623298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 30 (16.6 bits)
S2: 30 (16.2 bits)