>YBR142W MAK5 SGDID:S000000346, Chr II from 528311-530632, Verified
           ORF, "Essential nucleolar protein, putative DEAD-box RNA
           helicase required for maintenance of M1 dsRNA virus;
           involved in biogenesis of large (60S) ribosomal
           subunits"
          Length = 773

 Score = 29.3 bits (64), Expect = 0.001
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 88  SGVDEENKNL----LDEIMKLHESSISYLSSDNDVNSNTEYEKIKNEPXXXXXXXXXXXX 143
           SG D E++ L    LD+I +   S+ SY SSD D   N E  K+  +P            
Sbjct: 91  SGSDSESELLEFKNLDDIKEGELSAASYSSSDEDEQGNIESSKL-TDPSEDVDEDVDEDV 149

Query: 144 XXSSAEDSISDVEDIN--NLNERTN 166
              +  +   +++DI+  NL E TN
Sbjct: 150 LKENVFNKDINIDDISPVNLPEWTN 174

 Score = 20.0 bits (40), Expect = 0.57
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 361 FTSKKISTPHHNDNKKHPCDDPIYSNNTCCAEDNN---RFKN---NKSGVLKEAKCCSSD 414
           F +KK S    + NK+   DD     N   ++  +    FKN    K G L  A   SSD
Sbjct: 63  FVTKKDSKVLKDSNKEKVGDDQESVENESGSDSESELLEFKNLDDIKEGELSAASYSSSD 122

 Score = 19.2 bits (38), Expect = 0.96
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 618 SEDTGAYGIDINTDIVNLLKNILKSVEHTNVMIRLGMTNPPYILKHIKDICTLLKHKNMY 677
           S  T AYGI I   +++      K+ +  +++          +  H+K IC  +  K+ Y
Sbjct: 219 SGKTLAYGIPIVEKLISNFSQ--KNKKPISLIFTPTRELAHQVTDHLKKICEPVLAKSQY 276

Query: 678 EFIHI 682
             + +
Sbjct: 277 SILSL 281

 Score = 18.5 bits (36), Expect = 1.6
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 607 NEENIKEIWLTSEDTGAYGIDI 628
           N E   +IW T   +  + ID+
Sbjct: 364 NSEGSSKIWQTLIFSATFSIDL 385

 Score = 17.3 bits (33), Expect = 3.7
 Identities = 8/43 (18%), Positives = 17/43 (39%)

Query: 803 VLFTEISSKSEHIIGHTKQYVKVLLPNENNKNIELLGNFATCK 845
           ++FT     +  +  H K+  + +L       + L G  +  K
Sbjct: 247 LIFTPTRELAHQVTDHLKKICEPVLAKSQYSILSLTGGLSIQK 289

 Score = 16.5 bits (31), Expect = 6.3
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 768 KKINTKIVKKRSRDVTEAF---LSYEHNYKFLQNTIQQVLFTEISSKSEH-IIGHTKQYV 823
           K IN   VK     + E     +  +   K+L   +  +    +  +  + IIGH K   
Sbjct: 702 KTINKDKVKAMRATLNELLSVPIRKDRRQKYLTGGLVNLADNLVKKRGHNSIIGHEKTNA 761

Query: 824 KVLLPNENNKN 834
              L  +  +N
Sbjct: 762 LETLKKKKKRN 772

 Score = 16.2 bits (30), Expect = 8.2
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 684 VQSGSNNVLKNMNREYTIED 703
           V    + VLK+ N+E   +D
Sbjct: 64  VTKKDSKVLKDSNKEKVGDD 83

 Score = 16.2 bits (30), Expect = 8.2
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 394 NNRFKNNK 401
           + RFKNN+
Sbjct: 397 DRRFKNNE 404

Lambda     K      H
   0.315    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1260
Number of extensions: 61
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 8
Length of query: 860
Length of database: 773
Length adjustment: 41
Effective length of query: 819
Effective length of database: 732
Effective search space:   599508
Effective search space used:   599508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 30 (16.6 bits)
S2: 30 (16.2 bits)