>YMR173W DDR48 SGDID:S000004784, Chr XIII from 608688-609980,
           Verified ORF, "DNA damage-responsive protein, expression
           is increased in response to heat-shock stress or
           treatments that produce DNA lesions; contains multiple
           repeats of the amino acid sequence NNNDSYGS"
          Length = 430

 Score = 55.8 bits (133), Expect = 7e-12
 Identities = 57/208 (27%), Positives = 89/208 (42%), Gaps = 7/208 (3%)

Query: 304 IEKKTNIFNNDHIYNIFLS--GYSMHVILVQKDQRIIDNHRYNDILLNDSNSANLERTAC 361
           + K  N+   D + N F S  G      +  K ++   N   ND   N+++S        
Sbjct: 29  VTKAENMIGEDRV-NQFKSKIGEDRFDKMESKVRQQFSNTSINDNDSNNNDSYGSNNNDS 87

Query: 362 IEADTSDNHKEDADVIKKNVHKDMVKSMSIDSLKQISSDNLKYISSDNLKYISSDNLKYI 421
             ++ +D++  + +    + + D   S + DS    +     Y S+++  Y SS+N    
Sbjct: 88  YGSNNNDSYGSNNNDSYGSNNNDSYGSNNDDSYGSSNKKKSSYGSNNDDSYGSSNNNDSY 147

Query: 422 SSDNLKHIGSDNLKHIGSDNFKHIGSD--NFKHIGSDNFKHIGSDNFKHIGSDNFK--HI 477
            S+N    GS+N    GS+N    GS   N    GS+N    GS+N    GS N K    
Sbjct: 148 GSNNNDSYGSNNNDSYGSNNDDSYGSSNKNKSSYGSNNDDSYGSNNDDSYGSSNKKKSSY 207

Query: 478 GSDNFKHIGSDNFKHIGSDNLKHIGSDN 505
           GS N    GS+N    GS+N    GS+N
Sbjct: 208 GSSNNDSYGSNNDDSYGSNNNDSYGSNN 235

 Score = 52.4 bits (124), Expect = 8e-11
 Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 6/162 (3%)

Query: 349 NDSNSANLERTACIEADTSDNHKEDADVIKKNVHKDMVKSMSIDSLKQISSDNLKYISSD 408
           NDS  +N   +     + S     D      N  K    S + DS    S++N  Y S++
Sbjct: 93  NDSYGSNNNDSYGSNNNDSYGSNNDDSYGSSNKKKSSYGSNNDDSYGS-SNNNDSYGSNN 151

Query: 409 NLKYISSDNLKYISSDNLKHIGSD-NLKHIGSDNFKHIGSDNFKHIGSDNFKH--IGSDN 465
           N  Y S++N  Y S+++  +  S+ N    GS+N    GS+N    GS N K    GS N
Sbjct: 152 NDSYGSNNNDSYGSNNDDSYGSSNKNKSSYGSNNDDSYGSNNDDSYGSSNKKKSSYGSSN 211

Query: 466 FKHIGSDNFKHIGSDNFKHIGSDNFKHIGSDNLK--HIGSDN 505
               GS+N    GS+N    GS+N    GS N K    GS+N
Sbjct: 212 NDSYGSNNDDSYGSNNNDSYGSNNDDSYGSSNKKKSSYGSNN 253

 Score = 48.5 bits (114), Expect = 1e-09
 Identities = 44/118 (37%), Positives = 57/118 (48%), Gaps = 6/118 (5%)

Query: 398 SSDNLKYISSDNLKYISSDNLKYISSDNLKHIGSDNLKH--IGSDNFKHIGSDNFKH-IG 454
           S++N  Y S++N  Y S++N  Y  S+N    GS N K    GS+N    GS N     G
Sbjct: 90  SNNNDSYGSNNNDSYGSNNNDSY-GSNNDDSYGSSNKKKSSYGSNNDDSYGSSNNNDSYG 148

Query: 455 SDNFKHIGSDNFKHIGSDNFKHIGSDNFKH--IGSDNFKHIGSDNLKHIGSDNFKHIS 510
           S+N    GS+N    GS+N    GS N      GS+N    GS+N    GS N K  S
Sbjct: 149 SNNNDSYGSNNNDSYGSNNDDSYGSSNKNKSSYGSNNDDSYGSNNDDSYGSSNKKKSS 206

 Score = 47.4 bits (111), Expect = 2e-09
 Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 8/145 (5%)

Query: 365 DTSDNHKEDADVIKKNVHKDMVKSMSIDSLK-QISSDNLKYISSDNLKYISSDNLKYISS 423
           D+ +N++ D     +N    M+    ++  K +I  D    + S   +  S+ ++    S
Sbjct: 19  DSGNNNQGDYVTKAEN----MIGEDRVNQFKSKIGEDRFDKMESKVRQQFSNTSINDNDS 74

Query: 424 DNLKHIGSDNLKHIGSDNFKHIGSDNFKHIGSDNFKHIGSDNFKHIGSDNFK--HIGSDN 481
           +N    GS+N    GS+N    GS+N    GS+N    GS+N    GS N K    GS+N
Sbjct: 75  NNNDSYGSNNNDSYGSNNNDSYGSNNNDSYGSNNNDSYGSNNDDSYGSSNKKKSSYGSNN 134

Query: 482 FKHIG-SDNFKHIGSDNLKHIGSDN 505
               G S+N    GS+N    GS+N
Sbjct: 135 DDSYGSSNNNDSYGSNNNDSYGSNN 159

 Score = 45.4 bits (106), Expect = 9e-09
 Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 8/170 (4%)

Query: 349 NDSNSANLERTACIEADTSDNHKEDADVIKKNVHKDMVKSMSIDSLKQISSDNLKYISSD 408
           +DS  ++ ++ +   +  +D++  + D    + + D   S + DS    +     Y S++
Sbjct: 194 DDSYGSSNKKKSSYGSSNNDSYGSNNDDSYGSNNNDSYGSNNDDSYGSSNKKKSSYGSNN 253

Query: 409 NLKYISSDNLKYISSDNLKHIGSDNLKH----IGSDNFKHIGSDNFKHIGSDNFK--HIG 462
           +  Y SS+N     S+N    GS N         S++  +  S+N    GS N K    G
Sbjct: 254 DDSYGSSNNNDSYGSNNDDSYGSSNKNKSSYGSSSNDDSYGSSNNDDSYGSSNKKKSSYG 313

Query: 463 SDNFKHIGSDNFKHIGSDNFK--HIGSDNFKHIGSDNLKHIGSDNFKHIS 510
           S+N    GS+N    GS N K    GS N    GS+N    GS N K  S
Sbjct: 314 SNNDDSYGSNNDDSYGSSNKKKSSYGSSNNDSYGSNNDDSYGSSNKKKSS 363

 Score = 39.3 bits (90), Expect = 7e-07
 Identities = 48/154 (31%), Positives = 65/154 (42%), Gaps = 10/154 (6%)

Query: 365 DTSDNHKEDADVIKKNVHKDMVKSMSIDSLKQISSDNLKYISSDNLKYISSDNLKYISSD 424
           D S     D      N  K    S + DS    + D+  Y S++N  Y S+++  Y SS+
Sbjct: 186 DDSYGSNNDDSYGSSNKKKSSYGSSNNDSYGSNNDDS--YGSNNNDSYGSNNDDSYGSSN 243

Query: 425 NLKH-IGSDNLKHIGSDNFKH-IGSDNFKHIGSDNFKH----IGSDNFKHIGSDNFKHIG 478
             K   GS+N    GS N     GS+N    GS N         S++  +  S+N    G
Sbjct: 244 KKKSSYGSNNDDSYGSSNNNDSYGSNNDDSYGSSNKNKSSYGSSSNDDSYGSSNNDDSYG 303

Query: 479 SDNFK--HIGSDNFKHIGSDNLKHIGSDNFKHIS 510
           S N K    GS+N    GS+N    GS N K  S
Sbjct: 304 SSNKKKSSYGSNNDDSYGSNNDDSYGSSNKKKSS 337

 Score = 38.1 bits (87), Expect = 1e-06
 Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 10/127 (7%)

Query: 392 DSLKQISSDNLKYISSDNLK---YIS-SDNLKYISSDNLKH----IGSDNLKHIGSDNFK 443
           D +KQ ++ N     S N     Y++ ++N+  I  D +      IG D    + S   +
Sbjct: 5   DKVKQFANSNNNNNDSGNNNQGDYVTKAENM--IGEDRVNQFKSKIGEDRFDKMESKVRQ 62

Query: 444 HIGSDNFKHIGSDNFKHIGSDNFKHIGSDNFKHIGSDNFKHIGSDNFKHIGSDNLKHIGS 503
              + +     S+N    GS+N    GS+N    GS+N    GS+N    GS+N    GS
Sbjct: 63  QFSNTSINDNDSNNNDSYGSNNNDSYGSNNNDSYGSNNNDSYGSNNNDSYGSNNDDSYGS 122

Query: 504 DNFKHIS 510
            N K  S
Sbjct: 123 SNKKKSS 129

 Score = 37.0 bits (84), Expect = 3e-06
 Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 4/118 (3%)

Query: 392 DSLKQISSDNLKYISSDNLKYISSDNLKYISSDNLKH-IGSDNLKHIGSDNFKHIGSDNF 450
           DS    +     Y S+++  Y S+++  Y SS+  K   GS N    GS+N    GS N 
Sbjct: 300 DSYGSSNKKKSSYGSNNDDSYGSNNDDSYGSSNKKKSSYGSSNNDSYGSNNDDSYGSSNK 359

Query: 451 KH--IGSDNFKHIGSDNFKH-IGSDNFKHIGSDNFKHIGSDNFKHIGSDNLKHIGSDN 505
           K    GS+N    GS N     GS+N    GS N       +  +  S+N    GS N
Sbjct: 360 KKSSYGSNNDDSYGSSNNNDSYGSNNDDSYGSSNRNKNSYGSSNYGSSNNDDSYGSSN 417

 Score = 33.9 bits (76), Expect = 3e-05
 Identities = 40/149 (26%), Positives = 54/149 (36%), Gaps = 4/149 (2%)

Query: 344 NDILLNDSNSANLERTACIEADTSDNHKEDADVIKKNVHKDMVKSMSIDSLKQISSDNLK 403
           ND     SN       +    D+  +   D      N  K    S + DS    + D+  
Sbjct: 270 NDDSYGSSNKNKSSYGSSSNDDSYGSSNNDDSYGSSNKKKSSYGSNNDDSYGSNNDDSYG 329

Query: 404 YISSDNLKYISSDNLKYISSDNLKHIGSDNLKH--IGSDNFKHIGSDNFKH-IGSDNFKH 460
             +     Y SS+N  Y  S+N    GS N K    GS+N    GS N     GS+N   
Sbjct: 330 SSNKKKSSYGSSNNDSY-GSNNDDSYGSSNKKKSSYGSNNDDSYGSSNNNDSYGSNNDDS 388

Query: 461 IGSDNFKHIGSDNFKHIGSDNFKHIGSDN 489
            GS N       +  +  S+N    GS N
Sbjct: 389 YGSSNRNKNSYGSSNYGSSNNDDSYGSSN 417

 Score = 19.6 bits (39), Expect = 0.54
 Identities = 11/58 (18%), Positives = 20/58 (34%)

Query: 1058 NKFVSEDKNEENHFDNIVINDSYQNKVSFFSQVSLSTGNITNTIDLDTNKNEKKNDVN 1115
            ++F   +      F N  IND+  N    +   +  +    N     +N N+     N
Sbjct: 51   DRFDKMESKVRQQFSNTSINDNDSNNNDSYGSNNNDSYGSNNNDSYGSNNNDSYGSNN 108

 Score = 18.1 bits (35), Expect = 1.6
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 12/63 (19%)

Query: 1062 SEDKNEENHFDNIVINDSY------------QNKVSFFSQVSLSTGNITNTIDLDTNKNE 1109
            S   N ++ + +   NDSY            +NK S+ S  +  +   +N  D   + N+
Sbjct: 248  SYGSNNDDSYGSSNNNDSYGSNNDDSYGSSNKNKSSYGSSSNDDSYGSSNNDDSYGSSNK 307

Query: 1110 KKN 1112
            KK+
Sbjct: 308  KKS 310

 Score = 16.9 bits (32), Expect = 3.5
 Identities = 7/19 (36%), Positives = 9/19 (47%)

Query: 703 DDMKEEYNNNIKIGHHKHD 721
           DD     NNN   G + +D
Sbjct: 135 DDSYGSSNNNDSYGSNNND 153

 Score = 16.2 bits (30), Expect = 6.0
 Identities = 7/19 (36%), Positives = 8/19 (42%)

Query: 703 DDMKEEYNNNIKIGHHKHD 721
           DD     NNN   G +  D
Sbjct: 254 DDSYGSSNNNDSYGSNNDD 272

 Score = 16.2 bits (30), Expect = 6.0
 Identities = 7/19 (36%), Positives = 8/19 (42%)

Query: 703 DDMKEEYNNNIKIGHHKHD 721
           DD     NNN   G +  D
Sbjct: 369 DDSYGSSNNNDSYGSNNDD 387

Lambda     K      H
   0.316    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1969
Number of extensions: 188
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 17
Length of query: 1159
Length of database: 430
Length adjustment: 39
Effective length of query: 1120
Effective length of database: 391
Effective search space:   437920
Effective search space used:   437920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 29 (16.1 bits)
S2: 29 (15.8 bits)