>YMR290C HAS1 SGDID:S000004903, Chr XIII from 851590-850073, reverse
           complement, Verified ORF, "ATP-dependent RNA helicase;
           localizes to both the nuclear periphery and nucleolus;
           highly enriched in nuclear pore complex fractions;
           constituent of 66S pre-ribosomal particles"
          Length = 505

 Score =  467 bits (1201), Expect = e-136
 Identities = 223/441 (50%), Positives = 322/441 (73%), Gaps = 4/441 (0%)

Query: 149 KFEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLVPSIN 208
           KFEEL +     K ++++ F T+T +QA+ IP  L+G+D+LGAAKTGSGKTLAFL+P+I 
Sbjct: 43  KFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 102

Query: 209 ILYNIKFLPKNGTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEEKKKFI 268
           +L+++KF P+NGTG+++I+PTREL LQI+ V ++L ++  QT GI+IGG +R +E +K +
Sbjct: 103 LLHSLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLM 162

Query: 269 HGINILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLPKK-R 327
            G+N+LIATPGRLLDH+QNTK F++KNL  LIIDEADR+L+IGFE+E+  IIK LP + R
Sbjct: 163 KGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNEDR 222

Query: 328 QTALFSATQTTKVESLIRLSLQK-PIFIEVT--TKIATVERLQQGYALVDEDXXXXXXXX 384
           Q+ LFSATQTTKVE L R+SL+  P+FI V   T  +T + L+QGY + D D        
Sbjct: 223 QSMLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFLLLFS 282

Query: 385 XXXXNMSKKIMVFFNNCMSVQFYNDLLNYIDIPTYCIHGKKKQNKRLKSFHDFSAAKCAI 444
               N  KKI+VF ++C SV++Y +LLNYID+P   +HGK+KQ KR  +F +F  A+  I
Sbjct: 283 FLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGI 342

Query: 445 LLCTNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCRGQDSNGSAIIFLMKHELKFL 504
           L+CT+VAARGLDIP V++IIQ+DPPDD ++YIHRVGRT RG    G +++FL  +EL FL
Sbjct: 343 LICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNELGFL 402

Query: 505 NYLKFYNIPINQFAYDPNKLINIQSHIQSIVTKNFHLHKMAREAFKSYLNGYITYALKDV 564
            YLK   +P+N++ +  NK+ N+QS ++ ++  N++LH+ A++ ++SYL  Y +++LK V
Sbjct: 403 RYLKASKVPLNEYEFPENKIANVQSQLEKLIKSNYYLHQTAKDGYRSYLQAYASHSLKTV 462

Query: 565 FDVXXXXXXXTSKNFGLEVPP 585
           + +        +K++G  VPP
Sbjct: 463 YQIDKLDLAKVAKSYGFPVPP 483

 Score = 15.4 bits (28), Expect = 6.2
 Identities = 4/6 (66%), Positives = 5/6 (83%)

Query: 114 ICDHDK 119
           +CD DK
Sbjct: 270 VCDSDK 275

Lambda     K      H
   0.320    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 626
Number of extensions: 26
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 601
Length of database: 505
Length adjustment: 36
Effective length of query: 565
Effective length of database: 469
Effective search space:   264985
Effective search space used:   264985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 27 (15.3 bits)
S2: 27 (15.0 bits)