>YAR007C RFA1 SGDID:S000000065, Chr I from 158621-156756, reverse
           complement, Verified ORF, "Subunit of heterotrimeric
           Replication Factor A (RF-A), which is a highly conserved
           single-stranded DNA binding protein involved in DNA
           replication, repair, and recombination"
          Length = 621

 Score =  122 bits (306), Expect = 4e-32
 Identities = 102/456 (22%), Positives = 191/456 (41%), Gaps = 57/456 (12%)

Query: 7   LFRISQITTYVSKWIIKAKVVNKTKLSTFKN---NNSFFSIDVTDVHGDSISCKFWGSSA 63
           +F I Q++ Y + W IKA+V  K ++ T+ N   +   F+++  D  G+ I    +   A
Sbjct: 184 IFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGE-IRATAFNDFA 242

Query: 64  DKWFNVIELKKVYIFSKGRVSIANPKYNTVKHKYELTFNEDSEIHEVKDDGEIKIQKKIS 123
            K+  +++  KVY  SK ++  A P++  + H YEL  + D+ I E  D+  +  +   +
Sbjct: 243 TKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFDESNVP-KTHFN 301

Query: 124 LVNLRDIKIATKETPFTADLIGIVKHIGTVSNLKTKQGNDIAKQNIIIVDDTKHSFEISF 183
            + L  I+   +E     D++GI++ I     L ++ G    +++I IVDD+  S  +  
Sbjct: 302 FIKLDAIQ--NQEVNSNVDVLGIIQTINPHFELTSRAGKKFDRRDITIVDDSGFSISVGL 359

Query: 184 WDSNVNLIKEEIVENEIYIFTNINIRNWNDMKNGTFGVTSSIEKMENLNDELKAKCAKIS 243
           W  N   +   + E  +     + + ++   K+ + G +S++      N E+    A + 
Sbjct: 360 W--NQQALDFNLPEGSVAAIKGVRVTDFGG-KSLSMGFSSTLIP----NPEIPEAYA-LK 411

Query: 244 QWYNNSGKYEQFTNMRNILSNDVTQTPDKHYSISDVSDVLSKISGTYTLIGRIKRIYWKS 303
            WY++ G+   F          +T   +        + +   I+   T+         +S
Sbjct: 412 GWYDSKGRNANF----------ITLKQEPGMGGQSAASLTKFIAQRITIARAQAENLGRS 461

Query: 304 KENE-------------HRFYYPACM--KCKKKLLSSGHDNNMDNEFDNPEEDNIVYSCM 348
           ++ +               F YPAC    C KK+L               E+ +  + C 
Sbjct: 462 EKGDFFSVKAAISFLKVDNFAYPACSNENCNKKVL---------------EQPDGTWRCE 506

Query: 349 NCDENNVKPFYNYTFNFLFMDFSGSIILRAFSDEGYNLLGKKAEELKNL-DEDTLDYL-F 406
            CD NN +P + Y      +D +  + L  F D+   LLG  A  L +L +ED  ++   
Sbjct: 507 KCDTNNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEEDPNEFTKI 566

Query: 407 NYDFLYKEYKIVVRVNQKAYNGIERVNFTAMKIFPL 442
                  EY   +R  +  YN   R+ +T   +  L
Sbjct: 567 TQSIQMNEYDFRIRAREDTYNDQSRIRYTVANLHSL 602

 Score = 17.3 bits (33), Expect = 1.6
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 14/60 (23%)

Query: 67  FNVIELKKVYIFSKGRVSIANPKYNTVKHKYELTFNEDSEIHEVKDDGEIKIQKKISLVN 126
           F  +EL++  I    RV IA P     + KY L          + DD E+ +Q +  +VN
Sbjct: 69  FQSMELQRGDII---RVIIAEPAIVRERKKYVL----------LVDDFEL-VQSRADMVN 114

Lambda     K      H
   0.316    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 749
Number of extensions: 47
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 6
Length of query: 484
Length of database: 621
Length adjustment: 36
Effective length of query: 448
Effective length of database: 585
Effective search space:   262080
Effective search space used:   262080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 27 (15.2 bits)
S2: 27 (15.0 bits)