>YKL045W PRI2 SGDID:S000001528, Chr XI from 353137-354723, Verified
           ORF, "Subunit of DNA primase, which is required for DNA
           synthesis and double-strand break repair"
          Length = 528

 Score =  175 bits (444), Expect = 3e-48
 Identities = 143/533 (26%), Positives = 247/533 (46%), Gaps = 73/533 (13%)

Query: 19  NEKKLQNITIKNYEITNDESKKAFFDYYSCIYPFNMPISLYKYPPIFGYCSLSDFQEIGA 78
           +E  + N    N  I +  S +     Y+ +Y     +S Y  PP  G  +L  F+    
Sbjct: 24  SELDVGNTNAANQIILSSSSSEEEKKLYARLY--ESKLSFYDLPP-QGEITLEQFEIWAI 80

Query: 79  KRLALLQFLDTCTISGDDEKDQYTNLRKTDKNYSLNNTTDNKNKIIRQKIYEYKFGIQSM 138
            RL +L  +++C                            ++NK I++     K   Q +
Sbjct: 81  DRLKILLEIESCL---------------------------SRNKSIKEIETIIKPQFQKL 113

Query: 139 KDYNKEEMENIIMTDLLSHYILRIAFSKDKEKQQWFLKQELKLFTFRLNEL--------- 189
             +N E +E+    D  SH+ILR+ F + KE ++ F++ E  LF  R N L         
Sbjct: 114 LPFNTESLED-RKKDYYSHFILRLCFCRSKELREKFVRAETFLFKIRFNMLTSTDQTKFV 172

Query: 190 KNINVLNSQNISESERG-LVHLLKRENIHYESITKPSISYGNKNDEWEKYTEFIPNKDTI 248
           +++++   Q IS  E+  L H L      Y++++       N N+E ++   F       
Sbjct: 173 QSLDLPLLQFISNEEKAELSHQL------YQTVSASLQFQLNLNEEHQRKQYF-----QQ 221

Query: 249 QKLFKVPFYPDAYFLVRDHKVVVEKGVAYVPDIYLDIILTVQFKLNIKESFKYLDHNEKM 308
           +K  K+PF  +   LV +  V ++ G AY+P      +L+ +F   + +    L    + 
Sbjct: 222 EKFIKLPF-ENVIELVGNRLVFLKDGYAYLPQFQQLNLLSNEFASKLNQE---LIKTYQY 277

Query: 309 LLKIQNDPRISTFLSSLPKAYVAKDFRQ----NYEHTQDTRLSPQNLYS-VYKQSFPPCM 363
           L ++  D R+   L+ L   Y   DF Q     +    D  ++ Q+++S     ++P C+
Sbjct: 278 LPRLNEDDRLLPILNHLSSGYTIADFNQQKANQFSENVDDEINAQSVWSEEISSNYPLCI 337

Query: 364 RRIFVNYIKDKHLKHWGRQQLWLFLKGAGMTLDENIQ-----TNRSIWLQPDKFDKEHRY 418
           + +     K+ HL+++GRQQL LFLKG G++ DE ++       R+  +  +KF+KE+RY
Sbjct: 338 KNLMEGLKKNHHLRYYGRQQLSLFLKGIGLSADEALKFWSEAFTRNGNMTMEKFNKEYRY 397

Query: 419 NIRYMYGKEGKKTDFSPYNCSKIINNFPVPSSNDIHGCPFKNFDESHLKSLLYFFGLSDE 478
           + R+ YG EG + ++ P++C  I++  P P   D HGCPF+++    L + L    L+  
Sbjct: 398 SFRHNYGLEGNRINYKPWDCHTILSK-PRPGRGDYHGCPFRDWSHERLSAELRSMKLTQA 456

Query: 479 QIKSIMPLKRNNEYQMACVKFFMETHPGSVGD-GVGN-----HPNSYYVESRK 525
           QI S++   +  EY +AC K F  TH  +  D  +G      HPN Y+  SR+
Sbjct: 457 QIISVLDSCQKGEYTIACTKVFEMTHNSASADLEIGEQTHIAHPNLYFERSRQ 509

 Score = 21.2 bits (43), Expect = 0.10
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 7/70 (10%)

Query: 14  EKGKLNEKKLQNITIK---NYEITNDESKKAFFDYYSCI-YPFNMPISLYKYPPIF---G 66
           EK +L+ +  Q ++        +  +  +K +F     I  PF   I L     +F   G
Sbjct: 187 EKAELSHQLYQTVSASLQFQLNLNEEHQRKQYFQQEKFIKLPFENVIELVGNRLVFLKDG 246

Query: 67  YCSLSDFQEI 76
           Y  L  FQ++
Sbjct: 247 YAYLPQFQQL 256

 Score = 15.8 bits (29), Expect = 4.3
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 155 LSHYILRIAFSKDKEKQQWFLKQELKLF 182
           ++H  L    S+  +K+Q  L++E KLF
Sbjct: 497 IAHPNLYFERSRQLQKKQQKLEKE-KLF 523

Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 794
Number of extensions: 56
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 5
Length of query: 525
Length of database: 528
Length adjustment: 35
Effective length of query: 490
Effective length of database: 493
Effective search space:   241570
Effective search space used:   241570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 26 (14.8 bits)
S2: 26 (14.6 bits)