>YOR261C RPN8 SGDID:S000005787, Chr XV from 816931-815915, reverse
           complement, Verified ORF, "Essential, non-ATPase
           regulatory subunit of the 26S proteasome; has similarity
           to the human p40 proteasomal subunit and to another S.
           cerevisiae regulatory subunit, Rpn11p"
          Length = 338

 Score =  185 bits (469), Expect = 2e-51
 Identities = 101/268 (37%), Positives = 159/268 (59%), Gaps = 19/268 (7%)

Query: 34  DHYNRIASNTKKRVLGTILGEKIDGVVHITNSYALPFEEDIKDINIFYIDDNYNENLFNM 93
           DHY R  +   KR +G ILG+     + +TNS+ALPFEED K+ +++++D NY EN+  M
Sbjct: 20  DHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEM 79

Query: 94  IRKINTREKIVGWYTTGSNIKPNDIFINEIFYKY-HHAPIFLLVNVHTDQSIFPVNAYVA 152
            +KIN +EK++GWY +G  ++ +D+ INE+F KY  + P+ L+V+V       P +AYVA
Sbjct: 80  CKKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLLLIVDVKQQGVGLPTDAYVA 139

Query: 153 IEKAIHE-NKFRKTFIHIPVKIGAFEAEEVGVEFLLKELKSVSTSTLATKVGDXXXXXXX 211
           IE+   +     KTF+H+P  I A EAEE+GVE LL++++  +   L+ ++ +       
Sbjct: 140 IEQVKDDGTSTEKTFLHLPCTIEAEEAEEIGVEHLLRDVRDQAAGGLSIRLTNQLKSLKG 199

Query: 212 XXXXXYEISAYLNDILNGNIEMNIKILYNLQNVFSLLP----------DIENVD------ 255
                 ++  YL+ ++N  + +N  IL  LQ+VF+LLP          D+EN D      
Sbjct: 200 LQSKLKDVVEYLDKVINKELPINHTILGKLQDVFNLLPNLGTPDDDEIDVENHDRINISN 259

Query: 256 -LVQAFMVKNNDLMLNIYIGSITRSVIA 282
            L +A  VK ND ++ IYI ++ RS+IA
Sbjct: 260 NLQKALTVKTNDELMVIYISNLVRSIIA 287

 Score = 14.6 bits (26), Expect = 3.8
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 71  EEDIKDINIFYIDDNYNEN 89
           E+ +KD      DD+ +E+
Sbjct: 303 EQRVKDKQSKVSDDSESES 321

Lambda     K      H
   0.321    0.139    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 236
Number of extensions: 17
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 338
Length of database: 338
Length adjustment: 28
Effective length of query: 310
Effective length of database: 310
Effective search space:    96100
Effective search space used:    96100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 23 (13.5 bits)
S2: 23 (13.5 bits)